miRNA display CGI


Results 61 - 80 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 53876 0.71 0.9463
Target:  5'- uUGCGCGCAGcGCGCGCAu------- -3'
miRNA:   3'- cGCGCGCGUUuUGCGCGUugauaacc -5'
21341 5' -49.2 NC_004778.3 + 14247 0.71 0.950777
Target:  5'- uCGCGguUGCAAu-CGCGCGguacGCUAUUGGu -3'
miRNA:   3'- cGCGC--GCGUUuuGCGCGU----UGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 26984 0.71 0.935014
Target:  5'- cGCGCGCGUAGGAgccaugucaaaaccCGCGCGGCc----- -3'
miRNA:   3'- -CGCGCGCGUUUU--------------GCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 122043 0.7 0.962685
Target:  5'- -aGCGCcCAGcACGCGUAACU--UGGg -3'
miRNA:   3'- cgCGCGcGUUuUGCGCGUUGAuaACC- -5'
21341 5' -49.2 NC_004778.3 + 111598 0.7 0.956614
Target:  5'- gGCGCGCGguGuuACGCGCGccgaguacgcaauggGCguuUUGGc -3'
miRNA:   3'- -CGCGCGCguUu-UGCGCGU---------------UGau-AACC- -5'
21341 5' -49.2 NC_004778.3 + 75792 0.7 0.958965
Target:  5'- cGCaGCGUGCAAguugGACGCGCGAgUGc--- -3'
miRNA:   3'- -CG-CGCGCGUU----UUGCGCGUUgAUaacc -5'
21341 5' -49.2 NC_004778.3 + 34612 0.7 0.966165
Target:  5'- cGCgGUGCGCuccucGACGCGCAGCg--UGc -3'
miRNA:   3'- -CG-CGCGCGuu---UUGCGCGUUGauaACc -5'
21341 5' -49.2 NC_004778.3 + 47408 0.7 0.958965
Target:  5'- cGCGCGCGUGGAccACGCGCcACc----- -3'
miRNA:   3'- -CGCGCGCGUUU--UGCGCGuUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 69982 0.7 0.958965
Target:  5'- cGCGCGCccgccGCAAAACcUGCAACUGg--- -3'
miRNA:   3'- -CGCGCG-----CGUUUUGcGCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 106334 0.7 0.962685
Target:  5'- uUGCGCGCAAagacaaauaaugGACGCGCuggaaaaaAUUGGa -3'
miRNA:   3'- cGCGCGCGUU------------UUGCGCGuuga----UAACC- -5'
21341 5' -49.2 NC_004778.3 + 27453 0.7 0.964801
Target:  5'- cGCGUGCGCGAGcuugaauugguuuCGgGCAACgugccgUGGg -3'
miRNA:   3'- -CGCGCGCGUUUu------------GCgCGUUGaua---ACC- -5'
21341 5' -49.2 NC_004778.3 + 30749 0.7 0.966165
Target:  5'- aGCGCGaagcCAAAGCGCGcCAAUUuuugUGGg -3'
miRNA:   3'- -CGCGCgc--GUUUUGCGC-GUUGAua--ACC- -5'
21341 5' -49.2 NC_004778.3 + 98762 0.7 0.96749
Target:  5'- cGCGCGUGCAAgccgccaccauccccAGCGaCGCGACa----- -3'
miRNA:   3'- -CGCGCGCGUU---------------UUGC-GCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 21245 0.7 0.969409
Target:  5'- aGC-CGUGCAGucCGCGCGGCagGUUGa -3'
miRNA:   3'- -CGcGCGCGUUuuGCGCGUUGa-UAACc -5'
21341 5' -49.2 NC_004778.3 + 35184 0.7 0.969409
Target:  5'- gGUGUGCGCAcuGCaaaCGCAGCUugacuUUGGc -3'
miRNA:   3'- -CGCGCGCGUuuUGc--GCGUUGAu----AACC- -5'
21341 5' -49.2 NC_004778.3 + 73523 0.7 0.969409
Target:  5'- --aCGCGCAAuucggcGGCGCaGCAGCUuuuAUUGGa -3'
miRNA:   3'- cgcGCGCGUU------UUGCG-CGUUGA---UAACC- -5'
21341 5' -49.2 NC_004778.3 + 25386 0.7 0.970642
Target:  5'- aCGUG-GCAAGACGCGCAuuuucaucuuccaUAUUGGc -3'
miRNA:   3'- cGCGCgCGUUUUGCGCGUug-----------AUAACC- -5'
21341 5' -49.2 NC_004778.3 + 33383 0.7 0.954997
Target:  5'- cGCGC-CGUcuuuGGACGCGCccaacCUGUUGGa -3'
miRNA:   3'- -CGCGcGCGu---UUUGCGCGuu---GAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 25269 0.7 0.953757
Target:  5'- -aGCGCauaaucuccacuuuGCAAAACGCGCAGCg----- -3'
miRNA:   3'- cgCGCG--------------CGUUUUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 93626 0.7 0.958965
Target:  5'- -gGCGCGCGAAuucaauugucuGCGCGCcAUUAcgGGc -3'
miRNA:   3'- cgCGCGCGUUU-----------UGCGCGuUGAUaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.