miRNA display CGI


Results 81 - 100 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 33383 0.7 0.954997
Target:  5'- cGCGC-CGUcuuuGGACGCGCccaacCUGUUGGa -3'
miRNA:   3'- -CGCGcGCGu---UUUGCGCGuu---GAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 129538 0.69 0.972424
Target:  5'- cGgGCGCGUcGAccGCGCGCAAauacgcAUUGGc -3'
miRNA:   3'- -CgCGCGCGuUU--UGCGCGUUga----UAACC- -5'
21341 5' -49.2 NC_004778.3 + 124231 0.69 0.977802
Target:  5'- cCGCGCGCAucAGCGCGCcguGCa----- -3'
miRNA:   3'- cGCGCGCGUu-UUGCGCGu--UGauaacc -5'
21341 5' -49.2 NC_004778.3 + 40649 0.69 0.980181
Target:  5'- aGCGC-CGCAAGACGCa-AACUGUUc- -3'
miRNA:   3'- -CGCGcGCGUUUUGCGcgUUGAUAAcc -5'
21341 5' -49.2 NC_004778.3 + 110106 0.69 0.980181
Target:  5'- uGgGCGCGCc-GACGUGCAAaugGUUGc -3'
miRNA:   3'- -CgCGCGCGuuUUGCGCGUUga-UAACc -5'
21341 5' -49.2 NC_004778.3 + 121970 0.69 0.980181
Target:  5'- aGCGCGggcgacaucaacCGCAuuACGCGCGGCa----- -3'
miRNA:   3'- -CGCGC------------GCGUuuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 12639 0.69 0.982364
Target:  5'- cCGgGCG-AGAGCGCGCAACaAUaGGc -3'
miRNA:   3'- cGCgCGCgUUUUGCGCGUUGaUAaCC- -5'
21341 5' -49.2 NC_004778.3 + 43898 0.69 0.983185
Target:  5'- cGCGCGCGguGGACacaugaugugucccgGCGCGGCg----- -3'
miRNA:   3'- -CGCGCGCguUUUG---------------CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 6738 0.69 0.982364
Target:  5'- cCGCGCGCAAA-CGCGauuuGCgUGUUGc -3'
miRNA:   3'- cGCGCGCGUUUuGCGCgu--UG-AUAACc -5'
21341 5' -49.2 NC_004778.3 + 1642 0.69 0.982364
Target:  5'- uGCGCuGCGgAAAGCGaCGCGuc-GUUGGc -3'
miRNA:   3'- -CGCG-CGCgUUUUGC-GCGUugaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 52611 0.69 0.97522
Target:  5'- cGCGCGauaugGCAAAAuCGCGCGGCg----- -3'
miRNA:   3'- -CGCGCg----CGUUUU-GCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 63872 0.69 0.972424
Target:  5'- -gGCGCGCAcGACGUGC-GCgugAUUGc -3'
miRNA:   3'- cgCGCGCGUuUUGCGCGuUGa--UAACc -5'
21341 5' -49.2 NC_004778.3 + 103949 0.69 0.972424
Target:  5'- uUGCGCGCcacACGUGCAACcguucUUGGc -3'
miRNA:   3'- cGCGCGCGuuuUGCGCGUUGau---AACC- -5'
21341 5' -49.2 NC_004778.3 + 105149 0.69 0.980181
Target:  5'- gGCGC-CGCG--GCGCGC--UUGUUGGc -3'
miRNA:   3'- -CGCGcGCGUuuUGCGCGuuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 118782 0.69 0.977802
Target:  5'- gGCGCgGCGCGGccGGCGCGCAcaAUUAcgaGGc -3'
miRNA:   3'- -CGCG-CGCGUU--UUGCGCGU--UGAUaa-CC- -5'
21341 5' -49.2 NC_004778.3 + 107700 0.69 0.972133
Target:  5'- gGCGCGCugcucugcgguaaGCGAcGCGUGCAua-AUUGGg -3'
miRNA:   3'- -CGCGCG-------------CGUUuUGCGCGUugaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 62220 0.69 0.972424
Target:  5'- cCGCGCGCGAGuCGUGgGGCUcaaGGa -3'
miRNA:   3'- cGCGCGCGUUUuGCGCgUUGAuaaCC- -5'
21341 5' -49.2 NC_004778.3 + 104476 0.69 0.977802
Target:  5'- cGCuGCGUGCAAcaccucGACGCGUAuu--UUGGg -3'
miRNA:   3'- -CG-CGCGCGUU------UUGCGCGUugauAACC- -5'
21341 5' -49.2 NC_004778.3 + 9407 0.69 0.977802
Target:  5'- cGCGCGCaaacuGCAGcaguuuggcguGGCGCGCAc--GUUGGa -3'
miRNA:   3'- -CGCGCG-----CGUU-----------UUGCGCGUugaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 88219 0.69 0.977553
Target:  5'- gGCGCGgccgcccgucaaaCGCGAAaccACGUGCGACggugUGGc -3'
miRNA:   3'- -CGCGC-------------GCGUUU---UGCGCGUUGaua-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.