miRNA display CGI


Results 101 - 120 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 105149 0.69 0.980181
Target:  5'- gGCGC-CGCG--GCGCGC--UUGUUGGc -3'
miRNA:   3'- -CGCGcGCGUuuUGCGCGuuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 118866 0.69 0.977802
Target:  5'- gGCGCGCGCA-----CGCAACUGa-GGa -3'
miRNA:   3'- -CGCGCGCGUuuugcGCGUUGAUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 104476 0.69 0.977802
Target:  5'- cGCuGCGUGCAAcaccucGACGCGUAuu--UUGGg -3'
miRNA:   3'- -CG-CGCGCGUU------UUGCGCGUugauAACC- -5'
21341 5' -49.2 NC_004778.3 + 1642 0.69 0.982364
Target:  5'- uGCGCuGCGgAAAGCGaCGCGuc-GUUGGc -3'
miRNA:   3'- -CGCG-CGCgUUUUGC-GCGUugaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 9407 0.69 0.977802
Target:  5'- cGCGCGCaaacuGCAGcaguuuggcguGGCGCGCAc--GUUGGa -3'
miRNA:   3'- -CGCGCG-----CGUU-----------UUGCGCGUugaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 88219 0.69 0.977553
Target:  5'- gGCGCGgccgcccgucaaaCGCGAAaccACGUGCGACggugUGGc -3'
miRNA:   3'- -CGCGC-------------GCGUUU---UGCGCGUUGaua-ACC- -5'
21341 5' -49.2 NC_004778.3 + 52611 0.69 0.97522
Target:  5'- cGCGCGauaugGCAAAAuCGCGCGGCg----- -3'
miRNA:   3'- -CGCGCg----CGUUUU-GCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 14803 0.69 0.97522
Target:  5'- cCGCGUGCAGuacgacgacACGCGCGGCUuacUGa -3'
miRNA:   3'- cGCGCGCGUUu--------UGCGCGUUGAua-ACc -5'
21341 5' -49.2 NC_004778.3 + 50371 0.69 0.982364
Target:  5'- gGCGCGUGguGAccgucGCGCGCcACUGc--- -3'
miRNA:   3'- -CGCGCGCguUU-----UGCGCGuUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 129538 0.69 0.972424
Target:  5'- cGgGCGCGUcGAccGCGCGCAAauacgcAUUGGc -3'
miRNA:   3'- -CgCGCGCGuUU--UGCGCGUUga----UAACC- -5'
21341 5' -49.2 NC_004778.3 + 118782 0.69 0.977802
Target:  5'- gGCGCgGCGCGGccGGCGCGCAcaAUUAcgaGGc -3'
miRNA:   3'- -CGCG-CGCGUU--UUGCGCGU--UGAUaa-CC- -5'
21341 5' -49.2 NC_004778.3 + 38086 0.69 0.982364
Target:  5'- uGCG-GCGCG--ACGCGCAACa----- -3'
miRNA:   3'- -CGCgCGCGUuuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 60407 0.68 0.987835
Target:  5'- aGCGgGCGUAGAGauggaacgccCGCGCAGCa----- -3'
miRNA:   3'- -CGCgCGCGUUUU----------GCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 111905 0.68 0.99068
Target:  5'- cGCGCuGUGCGugauCGUGCAGuagAUUGGa -3'
miRNA:   3'- -CGCG-CGCGUuuu-GCGCGUUga-UAACC- -5'
21341 5' -49.2 NC_004778.3 + 93781 0.68 0.984361
Target:  5'- -gGCGCGCAGAcaauugaauucGCGCGCcACgcacagcaUGGg -3'
miRNA:   3'- cgCGCGCGUUU-----------UGCGCGuUGaua-----ACC- -5'
21341 5' -49.2 NC_004778.3 + 73644 0.68 0.989331
Target:  5'- aGCGUGCacGCGGAACGaCGUAGCUc---- -3'
miRNA:   3'- -CGCGCG--CGUUUUGC-GCGUUGAuaacc -5'
21341 5' -49.2 NC_004778.3 + 15857 0.68 0.984361
Target:  5'- gGCGCaucucGCGCAGcAGCGCGCcAUcgucgagcaguUGUUGGu -3'
miRNA:   3'- -CGCG-----CGCGUU-UUGCGCGuUG-----------AUAACC- -5'
21341 5' -49.2 NC_004778.3 + 28887 0.68 0.98511
Target:  5'- cGCGUGCGCGAugAACGCguguucaaucgcuuGCAgcgcugcagcgagcGCUAUUGu -3'
miRNA:   3'- -CGCGCGCGUU--UUGCG--------------CGU--------------UGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 57673 0.68 0.987835
Target:  5'- uGCGaCGCGCAAAauuugcggaacACGCGCGccaUGUcGGc -3'
miRNA:   3'- -CGC-GCGCGUUU-----------UGCGCGUug-AUAaCC- -5'
21341 5' -49.2 NC_004778.3 + 72512 0.68 0.989331
Target:  5'- uGCGCGCGUccAAGucgGCGCAcuugaccaaACUGUUGu -3'
miRNA:   3'- -CGCGCGCG--UUUug-CGCGU---------UGAUAACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.