miRNA display CGI


Results 41 - 60 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 61784 0.72 0.901009
Target:  5'- gGCGCGCGCu-GGCuGCGCGGCg----- -3'
miRNA:   3'- -CGCGCGCGuuUUG-CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 32837 0.72 0.907595
Target:  5'- aGCG-GCGU-AGACGCGCAGCUGc--- -3'
miRNA:   3'- -CGCgCGCGuUUUGCGCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 40529 0.72 0.907595
Target:  5'- gGCGCGuCGCAuucauugGCGCGACU-UUGGu -3'
miRNA:   3'- -CGCGC-GCGUuuug---CGCGUUGAuAACC- -5'
21341 5' -49.2 NC_004778.3 + 10268 0.72 0.910155
Target:  5'- uGCGCGCGgGAccggcGGCGCauugcaaaggcgcucGCGACUucGUUGGg -3'
miRNA:   3'- -CGCGCGCgUU-----UUGCG---------------CGUUGA--UAACC- -5'
21341 5' -49.2 NC_004778.3 + 58294 0.72 0.913918
Target:  5'- gGCGCGCugggcuuuGCAGgcgucGGCGCGUuuAACUcgUGGg -3'
miRNA:   3'- -CGCGCG--------CGUU-----UUGCGCG--UUGAuaACC- -5'
21341 5' -49.2 NC_004778.3 + 8815 0.72 0.913918
Target:  5'- gGCGCGCucaGCGAAugGCGCcuACUAa--- -3'
miRNA:   3'- -CGCGCG---CGUUUugCGCGu-UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 124084 0.72 0.913918
Target:  5'- -gGCGCGCugauGCGCGCggUUGgcGGc -3'
miRNA:   3'- cgCGCGCGuuu-UGCGCGuuGAUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 127005 0.72 0.919978
Target:  5'- aCGUGCGCAAcuugcaGGCGCGCGAUUuugUGu -3'
miRNA:   3'- cGCGCGCGUU------UUGCGCGUUGAua-ACc -5'
21341 5' -49.2 NC_004778.3 + 109968 0.72 0.919978
Target:  5'- gGCGCGCcCAuuACGUGCGACgacaagcUGGu -3'
miRNA:   3'- -CGCGCGcGUuuUGCGCGUUGaua----ACC- -5'
21341 5' -49.2 NC_004778.3 + 14363 0.72 0.919978
Target:  5'- aUGCGCuGCAAcGCGCGCGACa----- -3'
miRNA:   3'- cGCGCG-CGUUuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 124723 0.72 0.924635
Target:  5'- uGCGCGCGCGccuacgugacucGGCGCGC-GCUGUUu- -3'
miRNA:   3'- -CGCGCGCGUu-----------UUGCGCGuUGAUAAcc -5'
21341 5' -49.2 NC_004778.3 + 17107 0.71 0.931301
Target:  5'- uGUGCGCGCG--GCGCGCcuACcg-UGGc -3'
miRNA:   3'- -CGCGCGCGUuuUGCGCGu-UGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 5101 0.71 0.931301
Target:  5'- cUGUGCGC-GAACGUGCAGCUcgcgcUGGc -3'
miRNA:   3'- cGCGCGCGuUUUGCGCGUUGAua---ACC- -5'
21341 5' -49.2 NC_004778.3 + 116788 0.71 0.931301
Target:  5'- uGgGCGCGUAAAACGCGUucAGCgugccGGu -3'
miRNA:   3'- -CgCGCGCGUUUUGCGCG--UUGauaa-CC- -5'
21341 5' -49.2 NC_004778.3 + 26984 0.71 0.935014
Target:  5'- cGCGCGCGUAGGAgccaugucaaaaccCGCGCGGCc----- -3'
miRNA:   3'- -CGCGCGCGUUUU--------------GCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 40328 0.71 0.936565
Target:  5'- uGUGC-CGCA--ACGCGCGGCUGcccaacgUGGa -3'
miRNA:   3'- -CGCGcGCGUuuUGCGCGUUGAUa------ACC- -5'
21341 5' -49.2 NC_004778.3 + 8635 0.71 0.940092
Target:  5'- cGCGCuuGCGGAACGCGCcugaaccggccauuAGCUucUGGu -3'
miRNA:   3'- -CGCGcgCGUUUUGCGCG--------------UUGAuaACC- -5'
21341 5' -49.2 NC_004778.3 + 53876 0.71 0.9463
Target:  5'- uUGCGCGCAGcGCGCGCAu------- -3'
miRNA:   3'- cGCGCGCGUUuUGCGCGUugauaacc -5'
21341 5' -49.2 NC_004778.3 + 84153 0.71 0.9463
Target:  5'- aGCaUGCGCGucAgGCGUuGCUAUUGGa -3'
miRNA:   3'- -CGcGCGCGUuuUgCGCGuUGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 47466 0.71 0.9463
Target:  5'- cGUGCGCGuCAAcGAC-CGCGACaccgAUUGGa -3'
miRNA:   3'- -CGCGCGC-GUU-UUGcGCGUUGa---UAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.