Results 81 - 100 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 25386 | 0.7 | 0.970642 |
Target: 5'- aCGUG-GCAAGACGCGCAuuuucaucuuccaUAUUGGc -3' miRNA: 3'- cGCGCgCGUUUUGCGCGUug-----------AUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 107700 | 0.69 | 0.972133 |
Target: 5'- gGCGCGCugcucugcgguaaGCGAcGCGUGCAua-AUUGGg -3' miRNA: 3'- -CGCGCG-------------CGUUuUGCGCGUugaUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 62220 | 0.69 | 0.972424 |
Target: 5'- cCGCGCGCGAGuCGUGgGGCUcaaGGa -3' miRNA: 3'- cGCGCGCGUUUuGCGCgUUGAuaaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 129538 | 0.69 | 0.972424 |
Target: 5'- cGgGCGCGUcGAccGCGCGCAAauacgcAUUGGc -3' miRNA: 3'- -CgCGCGCGuUU--UGCGCGUUga----UAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 63872 | 0.69 | 0.972424 |
Target: 5'- -gGCGCGCAcGACGUGC-GCgugAUUGc -3' miRNA: 3'- cgCGCGCGUuUUGCGCGuUGa--UAACc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 103949 | 0.69 | 0.972424 |
Target: 5'- uUGCGCGCcacACGUGCAACcguucUUGGc -3' miRNA: 3'- cGCGCGCGuuuUGCGCGUUGau---AACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 52611 | 0.69 | 0.97522 |
Target: 5'- cGCGCGauaugGCAAAAuCGCGCGGCg----- -3' miRNA: 3'- -CGCGCg----CGUUUU-GCGCGUUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 89735 | 0.69 | 0.97522 |
Target: 5'- uGCGCGCGU---GCGgCGCGACUu---- -3' miRNA: 3'- -CGCGCGCGuuuUGC-GCGUUGAuaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 14803 | 0.69 | 0.97522 |
Target: 5'- cCGCGUGCAGuacgacgacACGCGCGGCUuacUGa -3' miRNA: 3'- cGCGCGCGUUu--------UGCGCGUUGAua-ACc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 80300 | 0.69 | 0.976278 |
Target: 5'- cGUGCGCGUGAAacagugucccgucccGuCGCGCGACUGg--- -3' miRNA: 3'- -CGCGCGCGUUU---------------U-GCGCGUUGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 88219 | 0.69 | 0.977553 |
Target: 5'- gGCGCGgccgcccgucaaaCGCGAAaccACGUGCGACggugUGGc -3' miRNA: 3'- -CGCGC-------------GCGUUU---UGCGCGUUGaua-ACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 104476 | 0.69 | 0.977802 |
Target: 5'- cGCuGCGUGCAAcaccucGACGCGUAuu--UUGGg -3' miRNA: 3'- -CG-CGCGCGUU------UUGCGCGUugauAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 9407 | 0.69 | 0.977802 |
Target: 5'- cGCGCGCaaacuGCAGcaguuuggcguGGCGCGCAc--GUUGGa -3' miRNA: 3'- -CGCGCG-----CGUU-----------UUGCGCGUugaUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 118782 | 0.69 | 0.977802 |
Target: 5'- gGCGCgGCGCGGccGGCGCGCAcaAUUAcgaGGc -3' miRNA: 3'- -CGCG-CGCGUU--UUGCGCGU--UGAUaa-CC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 118866 | 0.69 | 0.977802 |
Target: 5'- gGCGCGCGCA-----CGCAACUGa-GGa -3' miRNA: 3'- -CGCGCGCGUuuugcGCGUUGAUaaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 124231 | 0.69 | 0.977802 |
Target: 5'- cCGCGCGCAucAGCGCGCcguGCa----- -3' miRNA: 3'- cGCGCGCGUu-UUGCGCGu--UGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 105149 | 0.69 | 0.980181 |
Target: 5'- gGCGC-CGCG--GCGCGC--UUGUUGGc -3' miRNA: 3'- -CGCGcGCGUuuUGCGCGuuGAUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 110106 | 0.69 | 0.980181 |
Target: 5'- uGgGCGCGCc-GACGUGCAAaugGUUGc -3' miRNA: 3'- -CgCGCGCGuuUUGCGCGUUga-UAACc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 121970 | 0.69 | 0.980181 |
Target: 5'- aGCGCGggcgacaucaacCGCAuuACGCGCGGCa----- -3' miRNA: 3'- -CGCGC------------GCGUuuUGCGCGUUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 52372 | 0.69 | 0.980181 |
Target: 5'- cCGCGCGCAGcGAUGuCGCAACa----- -3' miRNA: 3'- cGCGCGCGUU-UUGC-GCGUUGauaacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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