miRNA display CGI


Results 101 - 120 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 105149 0.69 0.980181
Target:  5'- gGCGC-CGCG--GCGCGC--UUGUUGGc -3'
miRNA:   3'- -CGCGcGCGUuuUGCGCGuuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 47545 0.69 0.980181
Target:  5'- aCGCGCGC---GCGUGCGACa----- -3'
miRNA:   3'- cGCGCGCGuuuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 48880 0.69 0.980181
Target:  5'- cGUGCGUGCGAAcccguCGCcGCGGCUAc--- -3'
miRNA:   3'- -CGCGCGCGUUUu----GCG-CGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 1642 0.69 0.982364
Target:  5'- uGCGCuGCGgAAAGCGaCGCGuc-GUUGGc -3'
miRNA:   3'- -CGCG-CGCgUUUUGC-GCGUugaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 45753 0.69 0.982364
Target:  5'- gGCGCGgcuaUGCAGAAgGCGCGccaggcGCUGgaGGa -3'
miRNA:   3'- -CGCGC----GCGUUUUgCGCGU------UGAUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 12639 0.69 0.982364
Target:  5'- cCGgGCG-AGAGCGCGCAACaAUaGGc -3'
miRNA:   3'- cGCgCGCgUUUUGCGCGUUGaUAaCC- -5'
21341 5' -49.2 NC_004778.3 + 89106 0.69 0.982364
Target:  5'- uGCGCGCGC---ACGCGCuuccacucAACUAc--- -3'
miRNA:   3'- -CGCGCGCGuuuUGCGCG--------UUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 45084 0.69 0.982364
Target:  5'- gGCGCGCGCGGuacAGCaGCGCcguuuauagucAACUGUg-- -3'
miRNA:   3'- -CGCGCGCGUU---UUG-CGCG-----------UUGAUAacc -5'
21341 5' -49.2 NC_004778.3 + 50371 0.69 0.982364
Target:  5'- gGCGCGUGguGAccgucGCGCGCcACUGc--- -3'
miRNA:   3'- -CGCGCGCguUU-----UGCGCGuUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 38086 0.69 0.982364
Target:  5'- uGCG-GCGCG--ACGCGCAACa----- -3'
miRNA:   3'- -CGCgCGCGUuuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 6738 0.69 0.982364
Target:  5'- cCGCGCGCAAA-CGCGauuuGCgUGUUGc -3'
miRNA:   3'- cGCGCGCGUUUuGCGCgu--UG-AUAACc -5'
21341 5' -49.2 NC_004778.3 + 43898 0.69 0.983185
Target:  5'- cGCGCGCGguGGACacaugaugugucccgGCGCGGCg----- -3'
miRNA:   3'- -CGCGCGCguUUUG---------------CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 2548 0.68 0.983976
Target:  5'- uGCGgGCgGCGAccuuuaguuguCGCGCAAUUGUUGa -3'
miRNA:   3'- -CGCgCG-CGUUuu---------GCGCGUUGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 86079 0.68 0.984361
Target:  5'- uCGCuGCGUcAGGCGUGCcGCUAaUGGu -3'
miRNA:   3'- cGCG-CGCGuUUUGCGCGuUGAUaACC- -5'
21341 5' -49.2 NC_004778.3 + 15857 0.68 0.984361
Target:  5'- gGCGCaucucGCGCAGcAGCGCGCcAUcgucgagcaguUGUUGGu -3'
miRNA:   3'- -CGCG-----CGCGUU-UUGCGCGuUG-----------AUAACC- -5'
21341 5' -49.2 NC_004778.3 + 93781 0.68 0.984361
Target:  5'- -gGCGCGCAGAcaauugaauucGCGCGCcACgcacagcaUGGg -3'
miRNA:   3'- cgCGCGCGUUU-----------UGCGCGuUGaua-----ACC- -5'
21341 5' -49.2 NC_004778.3 + 57948 0.68 0.984361
Target:  5'- cGCGCGCGCcu-GCGCuGCGcugGCUGc--- -3'
miRNA:   3'- -CGCGCGCGuuuUGCG-CGU---UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 26333 0.68 0.984361
Target:  5'- uGC-CGCGCAAa--GCGCAACUGc--- -3'
miRNA:   3'- -CGcGCGCGUUuugCGCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 28887 0.68 0.98511
Target:  5'- cGCGUGCGCGAugAACGCguguucaaucgcuuGCAgcgcugcagcgagcGCUAUUGu -3'
miRNA:   3'- -CGCGCGCGUU--UUGCG--------------CGU--------------UGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 95936 0.68 0.986182
Target:  5'- gGCGCaGCGCGGccGGCGCGCuGCcgcgcGGa -3'
miRNA:   3'- -CGCG-CGCGUU--UUGCGCGuUGauaa-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.