miRNA display CGI


Results 81 - 100 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 45299 0.68 0.99068
Target:  5'- cGCGauccaGCGCAuuuCGCGCGGCcg--GGu -3'
miRNA:   3'- -CGCg----CGCGUuuuGCGCGUUGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 52538 0.68 0.99068
Target:  5'- uGCGUGuUGCAAAACGC-CAcCaGUUGGc -3'
miRNA:   3'- -CGCGC-GCGUUUUGCGcGUuGaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 28003 0.68 0.99068
Target:  5'- -aGCGCGCAccuGCGaGCAACgcaUGGc -3'
miRNA:   3'- cgCGCGCGUuu-UGCgCGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 73644 0.68 0.989331
Target:  5'- aGCGUGCacGCGGAACGaCGUAGCUc---- -3'
miRNA:   3'- -CGCGCG--CGUUUUGC-GCGUUGAuaacc -5'
21341 5' -49.2 NC_004778.3 + 34140 0.68 0.989331
Target:  5'- aGCGCGCGUAcGACGaCGCGGuCgcc-GGc -3'
miRNA:   3'- -CGCGCGCGUuUUGC-GCGUU-GauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 33846 0.68 0.989331
Target:  5'- uGUGCGCGCA--ACGUGUcauACg--UGGu -3'
miRNA:   3'- -CGCGCGCGUuuUGCGCGu--UGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 58097 0.68 0.989331
Target:  5'- aGCGCaGCGCAGGcGCGCGCGu---UUGc -3'
miRNA:   3'- -CGCG-CGCGUUU-UGCGCGUugauAACc -5'
21341 5' -49.2 NC_004778.3 + 90399 0.68 0.989331
Target:  5'- aCGCGCGCAauggaccauGAACGgGCuGugUuUUGGa -3'
miRNA:   3'- cGCGCGCGU---------UUUGCgCG-UugAuAACC- -5'
21341 5' -49.2 NC_004778.3 + 72512 0.68 0.989331
Target:  5'- uGCGCGCGUccAAGucgGCGCAcuugaccaaACUGUUGu -3'
miRNA:   3'- -CGCGCGCG--UUUug-CGCGU---------UGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 83266 0.68 0.989331
Target:  5'- uGCaGaCGCGCGGAACGgCGCGGCg----- -3'
miRNA:   3'- -CG-C-GCGCGUUUUGC-GCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 19285 0.68 0.987835
Target:  5'- cGCGuCGUGCAAca-GCGCGAUc-UUGGa -3'
miRNA:   3'- -CGC-GCGCGUUuugCGCGUUGauAACC- -5'
21341 5' -49.2 NC_004778.3 + 57673 0.68 0.987835
Target:  5'- uGCGaCGCGCAAAauuugcggaacACGCGCGccaUGUcGGc -3'
miRNA:   3'- -CGC-GCGCGUUU-----------UGCGCGUug-AUAaCC- -5'
21341 5' -49.2 NC_004778.3 + 60407 0.68 0.987835
Target:  5'- aGCGgGCGUAGAGauggaacgccCGCGCAGCa----- -3'
miRNA:   3'- -CGCgCGCGUUUU----------GCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 37831 0.68 0.987835
Target:  5'- aGCGCGCgGCGAcACGCGUggUg----- -3'
miRNA:   3'- -CGCGCG-CGUUuUGCGCGuuGauaacc -5'
21341 5' -49.2 NC_004778.3 + 69946 0.68 0.987835
Target:  5'- uGC-CGCGCuuaAAAGCGCGCuGCUAg--- -3'
miRNA:   3'- -CGcGCGCG---UUUUGCGCGuUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 26849 0.68 0.987835
Target:  5'- cGCGCGCGCugcguuuCGCGUugaacaaaaaaGACUAUg-- -3'
miRNA:   3'- -CGCGCGCGuuuu---GCGCG-----------UUGAUAacc -5'
21341 5' -49.2 NC_004778.3 + 119121 0.68 0.987677
Target:  5'- cGgGCGCGgGAAcgGCGCcCAauaagacGCUGUUGGu -3'
miRNA:   3'- -CgCGCGCgUUU--UGCGcGU-------UGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 70118 0.68 0.987193
Target:  5'- gGCGCGCGCAuucgguaccuagcAGCGCGCuuUUAa--- -3'
miRNA:   3'- -CGCGCGCGUu------------UUGCGCGuuGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 11774 0.68 0.986182
Target:  5'- uGCGCGgacccguuaaaGCAAAACGCGCcgUU-UUGGa -3'
miRNA:   3'- -CGCGCg----------CGUUUUGCGCGuuGAuAACC- -5'
21341 5' -49.2 NC_004778.3 + 47360 0.68 0.986182
Target:  5'- cGC-CGCuGCAcAGCGUGCGGCguuauuUUGGg -3'
miRNA:   3'- -CGcGCG-CGUuUUGCGCGUUGau----AACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.