miRNA display CGI


Results 41 - 60 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 19126 0.67 0.994792
Target:  5'- cGgGCGCGCGAGcgGCGCuguuucgaacacGAC-AUUGGa -3'
miRNA:   3'- -CgCGCGCGUUUugCGCG------------UUGaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 19199 0.72 0.901009
Target:  5'- cGCGCGgGCAccuugguGACGUGCuugAACUGaUGGg -3'
miRNA:   3'- -CGCGCgCGUu------UUGCGCG---UUGAUaACC- -5'
21341 5' -49.2 NC_004778.3 + 19285 0.68 0.987835
Target:  5'- cGCGuCGUGCAAca-GCGCGAUc-UUGGa -3'
miRNA:   3'- -CGC-GCGCGUUuugCGCGUUGauAACC- -5'
21341 5' -49.2 NC_004778.3 + 21245 0.7 0.969409
Target:  5'- aGC-CGUGCAGucCGCGCGGCagGUUGa -3'
miRNA:   3'- -CGcGCGCGUUuuGCGCGUUGa-UAACc -5'
21341 5' -49.2 NC_004778.3 + 22761 0.66 0.99773
Target:  5'- uUGCGCaCAAuauUGCGCcccauggugaGGCUAUUGGg -3'
miRNA:   3'- cGCGCGcGUUuu-GCGCG----------UUGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 23750 0.74 0.839431
Target:  5'- aGCGCGUGCGccGAUGCuuGCAGCUAaagUGGc -3'
miRNA:   3'- -CGCGCGCGUu-UUGCG--CGUUGAUa--ACC- -5'
21341 5' -49.2 NC_004778.3 + 24826 0.67 0.993937
Target:  5'- aGCGUGCgGCAAGuGCGCGUca-UAUUGa -3'
miRNA:   3'- -CGCGCG-CGUUU-UGCGCGuugAUAACc -5'
21341 5' -49.2 NC_004778.3 + 25065 0.77 0.679309
Target:  5'- aUGUGCGC-AAACGCGCAGCUucuaucgcauauUUGGg -3'
miRNA:   3'- cGCGCGCGuUUUGCGCGUUGAu-----------AACC- -5'
21341 5' -49.2 NC_004778.3 + 25151 0.67 0.991776
Target:  5'- gGCGCGUGCAAAccugcacguucuuGCGgCGCAGacaagGUUGc -3'
miRNA:   3'- -CGCGCGCGUUU-------------UGC-GCGUUga---UAACc -5'
21341 5' -49.2 NC_004778.3 + 25269 0.7 0.953757
Target:  5'- -aGCGCauaaucuccacuuuGCAAAACGCGCAGCg----- -3'
miRNA:   3'- cgCGCG--------------CGUUUUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 25386 0.7 0.970642
Target:  5'- aCGUG-GCAAGACGCGCAuuuucaucuuccaUAUUGGc -3'
miRNA:   3'- cGCGCgCGUUUUGCGCGUug-----------AUAACC- -5'
21341 5' -49.2 NC_004778.3 + 25690 0.67 0.995547
Target:  5'- -gGCGCGCG--AUGCGCGAUaAgcGGu -3'
miRNA:   3'- cgCGCGCGUuuUGCGCGUUGaUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 26138 0.66 0.99773
Target:  5'- -aGCGUGCG--ACGUGCAGCa----- -3'
miRNA:   3'- cgCGCGCGUuuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 26333 0.68 0.984361
Target:  5'- uGC-CGCGCAAa--GCGCAACUGc--- -3'
miRNA:   3'- -CGcGCGCGUUuugCGCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 26485 0.7 0.969409
Target:  5'- uGCGCaguuGCGCuuuGCGCGgCAGCUGUg-- -3'
miRNA:   3'- -CGCG----CGCGuuuUGCGC-GUUGAUAacc -5'
21341 5' -49.2 NC_004778.3 + 26849 0.68 0.987835
Target:  5'- cGCGCGCGCugcguuuCGCGUugaacaaaaaaGACUAUg-- -3'
miRNA:   3'- -CGCGCGCGuuuu---GCGCG-----------UUGAUAacc -5'
21341 5' -49.2 NC_004778.3 + 26984 0.71 0.935014
Target:  5'- cGCGCGCGUAGGAgccaugucaaaaccCGCGCGGCc----- -3'
miRNA:   3'- -CGCGCGCGUUUU--------------GCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 27453 0.7 0.964801
Target:  5'- cGCGUGCGCGAGcuugaauugguuuCGgGCAACgugccgUGGg -3'
miRNA:   3'- -CGCGCGCGUUUu------------GCgCGUUGaua---ACC- -5'
21341 5' -49.2 NC_004778.3 + 27936 0.66 0.99773
Target:  5'- aGCGUGCGC---ACGCGUAucacaaaauggcGCUcgUGc -3'
miRNA:   3'- -CGCGCGCGuuuUGCGCGU------------UGAuaACc -5'
21341 5' -49.2 NC_004778.3 + 28003 0.68 0.99068
Target:  5'- -aGCGCGCAccuGCGaGCAACgcaUGGc -3'
miRNA:   3'- cgCGCGCGUuu-UGCgCGUUGauaACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.