miRNA display CGI


Results 61 - 80 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 28037 0.67 0.993937
Target:  5'- gGCG-GCG-AGGACGCGCuGCUGaacUGGa -3'
miRNA:   3'- -CGCgCGCgUUUUGCGCGuUGAUa--ACC- -5'
21341 5' -49.2 NC_004778.3 + 28551 0.67 0.994792
Target:  5'- aCGCGCuuuuGCAAAuCGCGCAAUUc--GGa -3'
miRNA:   3'- cGCGCG----CGUUUuGCGCGUUGAuaaCC- -5'
21341 5' -49.2 NC_004778.3 + 28887 0.68 0.98511
Target:  5'- cGCGUGCGCGAugAACGCguguucaaucgcuuGCAgcgcugcagcgagcGCUAUUGu -3'
miRNA:   3'- -CGCGCGCGUU--UUGCG--------------CGU--------------UGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 29287 0.67 0.992973
Target:  5'- cCGUGCGUgAGGGCGCGUAACg----- -3'
miRNA:   3'- cGCGCGCG-UUUUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 29339 0.74 0.847939
Target:  5'- gGCGCGCGCugggguGCGCcaaGCGGCUGUa-- -3'
miRNA:   3'- -CGCGCGCGuuu---UGCG---CGUUGAUAacc -5'
21341 5' -49.2 NC_004778.3 + 29348 0.67 0.993937
Target:  5'- cGCGUGCGCGAuuGGCuGCcgaGCGACgacccgUGGc -3'
miRNA:   3'- -CGCGCGCGUU--UUG-CG---CGUUGaua---ACC- -5'
21341 5' -49.2 NC_004778.3 + 29477 0.74 0.856229
Target:  5'- aGCGCGCGC----CGCGCcaccuucgaaGAUUAUUGGc -3'
miRNA:   3'- -CGCGCGCGuuuuGCGCG----------UUGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 30749 0.7 0.966165
Target:  5'- aGCGCGaagcCAAAGCGCGcCAAUUuuugUGGg -3'
miRNA:   3'- -CGCGCgc--GUUUUGCGC-GUUGAua--ACC- -5'
21341 5' -49.2 NC_004778.3 + 31250 0.79 0.593195
Target:  5'- gGCGCGCGCAccucgcgccGAgaaacuugcguucGCGCGCGACUGcuccgacUUGGa -3'
miRNA:   3'- -CGCGCGCGU---------UU-------------UGCGCGUUGAU-------AACC- -5'
21341 5' -49.2 NC_004778.3 + 31862 0.66 0.997689
Target:  5'- cCGCGCaGCAAAACcgcaucgucgaguGCGaCAGCgaaAUUGGc -3'
miRNA:   3'- cGCGCG-CGUUUUG-------------CGC-GUUGa--UAACC- -5'
21341 5' -49.2 NC_004778.3 + 32837 0.72 0.907595
Target:  5'- aGCG-GCGU-AGACGCGCAGCUGc--- -3'
miRNA:   3'- -CGCgCGCGuUUUGCGCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 32909 0.75 0.802456
Target:  5'- gGCGCGUGCAcgcccgcAGACGCGaAACacugUGUUGGg -3'
miRNA:   3'- -CGCGCGCGU-------UUUGCGCgUUG----AUAACC- -5'
21341 5' -49.2 NC_004778.3 + 33383 0.7 0.954997
Target:  5'- cGCGC-CGUcuuuGGACGCGCccaacCUGUUGGa -3'
miRNA:   3'- -CGCGcGCGu---UUUGCGCGuu---GAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 33445 0.66 0.998106
Target:  5'- gGCG-GCGCGAAAaGCGCGGCc----- -3'
miRNA:   3'- -CGCgCGCGUUUUgCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 33846 0.68 0.989331
Target:  5'- uGUGCGCGCA--ACGUGUcauACg--UGGu -3'
miRNA:   3'- -CGCGCGCGUuuUGCGCGu--UGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 34140 0.68 0.989331
Target:  5'- aGCGCGCGUAcGACGaCGCGGuCgcc-GGc -3'
miRNA:   3'- -CGCGCGCGUuUUGC-GCGUU-GauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 34179 0.73 0.864294
Target:  5'- uGCGCaGCauGCAGGACGUGCugugGCUGUUGu -3'
miRNA:   3'- -CGCG-CG--CGUUUUGCGCGu---UGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 34612 0.7 0.966165
Target:  5'- cGCgGUGCGCuccucGACGCGCAGCg--UGc -3'
miRNA:   3'- -CG-CGCGCGuu---UUGCGCGUUGauaACc -5'
21341 5' -49.2 NC_004778.3 + 35184 0.7 0.969409
Target:  5'- gGUGUGCGCAcuGCaaaCGCAGCUugacuUUGGc -3'
miRNA:   3'- -CGCGCGCGUuuUGc--GCGUUGAu----AACC- -5'
21341 5' -49.2 NC_004778.3 + 36705 0.67 0.994792
Target:  5'- cGCGCuCGcCAAGACGCGCAcCgcc-GGc -3'
miRNA:   3'- -CGCGcGC-GUUUUGCGCGUuGauaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.