miRNA display CGI


Results 81 - 100 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 37284 0.68 0.99068
Target:  5'- aUGCGCGCAAAACGUcCGAa---UGGc -3'
miRNA:   3'- cGCGCGCGUUUUGCGcGUUgauaACC- -5'
21341 5' -49.2 NC_004778.3 + 37500 0.67 0.994792
Target:  5'- uGC-CGUGCAAGua--GCAAUUGUUGGg -3'
miRNA:   3'- -CGcGCGCGUUUugcgCGUUGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 37831 0.68 0.987835
Target:  5'- aGCGCGCgGCGAcACGCGUggUg----- -3'
miRNA:   3'- -CGCGCG-CGUUuUGCGCGuuGauaacc -5'
21341 5' -49.2 NC_004778.3 + 38086 0.69 0.982364
Target:  5'- uGCG-GCGCG--ACGCGCAACa----- -3'
miRNA:   3'- -CGCgCGCGUuuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 38137 0.66 0.996789
Target:  5'- aCGUGUGCAugacugcuGACGCGCcGCUAc--- -3'
miRNA:   3'- cGCGCGCGUu-------UUGCGCGuUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 38252 0.67 0.994792
Target:  5'- gGCGUGCGCGcua-GCGUG-CUGUUGc -3'
miRNA:   3'- -CGCGCGCGUuuugCGCGUuGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 38315 0.66 0.997689
Target:  5'- gGCGCGgGUAgcguggaggugucGAGCgGCGCAGCg---GGc -3'
miRNA:   3'- -CGCGCgCGU-------------UUUG-CGCGUUGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 38357 0.74 0.839431
Target:  5'- cGCGCGCGCu-AGCGCGCAu------- -3'
miRNA:   3'- -CGCGCGCGuuUUGCGCGUugauaacc -5'
21341 5' -49.2 NC_004778.3 + 38452 0.66 0.996789
Target:  5'- -gGCGCGCGGucGCGUGCGcGCUGg--- -3'
miRNA:   3'- cgCGCGCGUUu-UGCGCGU-UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 38504 0.73 0.864294
Target:  5'- aUGCGCGCuagcGCGCGCGACgaccGGu -3'
miRNA:   3'- cGCGCGCGuuu-UGCGCGUUGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 40328 0.71 0.936565
Target:  5'- uGUGC-CGCA--ACGCGCGGCUGcccaacgUGGa -3'
miRNA:   3'- -CGCGcGCGUuuUGCGCGUUGAUa------ACC- -5'
21341 5' -49.2 NC_004778.3 + 40529 0.72 0.907595
Target:  5'- gGCGCGuCGCAuucauugGCGCGACU-UUGGu -3'
miRNA:   3'- -CGCGC-GCGUuuug---CGCGUUGAuAACC- -5'
21341 5' -49.2 NC_004778.3 + 40649 0.69 0.980181
Target:  5'- aGCGC-CGCAAGACGCa-AACUGUUc- -3'
miRNA:   3'- -CGCGcGCGUUUUGCGcgUUGAUAAcc -5'
21341 5' -49.2 NC_004778.3 + 41216 0.76 0.774526
Target:  5'- gGCacCGCGCuGGACGCGCGACUGcgagcggUGGa -3'
miRNA:   3'- -CGc-GCGCGuUUUGCGCGUUGAUa------ACC- -5'
21341 5' -49.2 NC_004778.3 + 41491 0.66 0.997246
Target:  5'- aGCG-GUGCAAAAUGaCGcCGACUuugcauuGUUGGu -3'
miRNA:   3'- -CGCgCGCGUUUUGC-GC-GUUGA-------UAACC- -5'
21341 5' -49.2 NC_004778.3 + 43898 0.69 0.983185
Target:  5'- cGCGCGCGguGGACacaugaugugucccgGCGCGGCg----- -3'
miRNA:   3'- -CGCGCGCguUUUG---------------CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 43986 0.75 0.793931
Target:  5'- gGCGCGcCGCccAACGCGCGGCcGgcGGg -3'
miRNA:   3'- -CGCGC-GCGuuUUGCGCGUUGaUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 45084 0.69 0.982364
Target:  5'- gGCGCGCGCGGuacAGCaGCGCcguuuauagucAACUGUg-- -3'
miRNA:   3'- -CGCGCGCGUU---UUG-CGCG-----------UUGAUAacc -5'
21341 5' -49.2 NC_004778.3 + 45145 0.68 0.986182
Target:  5'- gGC-CGCGCGAAAUGCGCuggaucgcgAGCUAg--- -3'
miRNA:   3'- -CGcGCGCGUUUUGCGCG---------UUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 45215 0.8 0.556943
Target:  5'- uCGCGCGCuGAugguagcgcucgucgGCGCGCAACUGUuUGGc -3'
miRNA:   3'- cGCGCGCGuUU---------------UGCGCGUUGAUA-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.