miRNA display CGI


Results 101 - 120 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 45299 0.68 0.99068
Target:  5'- cGCGauccaGCGCAuuuCGCGCGGCcg--GGu -3'
miRNA:   3'- -CGCg----CGCGUuuuGCGCGUUGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 45753 0.69 0.982364
Target:  5'- gGCGCGgcuaUGCAGAAgGCGCGccaggcGCUGgaGGa -3'
miRNA:   3'- -CGCGC----GCGUUUUgCGCGU------UGAUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 46563 0.66 0.99773
Target:  5'- uGUGCGaCGCGGcACGCGcCAAagagUGGc -3'
miRNA:   3'- -CGCGC-GCGUUuUGCGC-GUUgauaACC- -5'
21341 5' -49.2 NC_004778.3 + 47360 0.68 0.986182
Target:  5'- cGC-CGCuGCAcAGCGUGCGGCguuauuUUGGg -3'
miRNA:   3'- -CGcGCG-CGUuUUGCGCGUUGau----AACC- -5'
21341 5' -49.2 NC_004778.3 + 47408 0.7 0.958965
Target:  5'- cGCGCGCGUGGAccACGCGCcACc----- -3'
miRNA:   3'- -CGCGCGCGUUU--UGCGCGuUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 47466 0.71 0.9463
Target:  5'- cGUGCGCGuCAAcGAC-CGCGACaccgAUUGGa -3'
miRNA:   3'- -CGCGCGC-GUU-UUGcGCGUUGa---UAACC- -5'
21341 5' -49.2 NC_004778.3 + 47545 0.69 0.980181
Target:  5'- aCGCGCGC---GCGUGCGACa----- -3'
miRNA:   3'- cGCGCGCGuuuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 47989 0.77 0.70272
Target:  5'- aCGCGCGCAc-GCGCGCAACagacAUUGa -3'
miRNA:   3'- cGCGCGCGUuuUGCGCGUUGa---UAACc -5'
21341 5' -49.2 NC_004778.3 + 48134 0.73 0.887068
Target:  5'- uGCGCGCGU---GCGCGCGuACUGg--- -3'
miRNA:   3'- -CGCGCGCGuuuUGCGCGU-UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 48880 0.69 0.980181
Target:  5'- cGUGCGUGCGAAcccguCGCcGCGGCUAc--- -3'
miRNA:   3'- -CGCGCGCGUUUu----GCG-CGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 50371 0.69 0.982364
Target:  5'- gGCGCGUGguGAccgucGCGCGCcACUGc--- -3'
miRNA:   3'- -CGCGCGCguUU-----UGCGCGuUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 52372 0.69 0.980181
Target:  5'- cCGCGCGCAGcGAUGuCGCAACa----- -3'
miRNA:   3'- cGCGCGCGUU-UUGC-GCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 52538 0.68 0.99068
Target:  5'- uGCGUGuUGCAAAACGC-CAcCaGUUGGc -3'
miRNA:   3'- -CGCGC-GCGUUUUGCGcGUuGaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 52611 0.69 0.97522
Target:  5'- cGCGCGauaugGCAAAAuCGCGCGGCg----- -3'
miRNA:   3'- -CGCGCg----CGUUUU-GCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 53731 0.77 0.723728
Target:  5'- uGCGCGCGCu--GCGCGCAaAUUAUa-- -3'
miRNA:   3'- -CGCGCGCGuuuUGCGCGU-UGAUAacc -5'
21341 5' -49.2 NC_004778.3 + 53876 0.71 0.9463
Target:  5'- uUGCGCGCAGcGCGCGCAu------- -3'
miRNA:   3'- cGCGCGCGUUuUGCGCGUugauaacc -5'
21341 5' -49.2 NC_004778.3 + 54217 0.73 0.894166
Target:  5'- uUGCGuCGCuuguauguCGCGCAACUGUUGu -3'
miRNA:   3'- cGCGC-GCGuuuu----GCGCGUUGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 54634 0.67 0.995547
Target:  5'- aGCGaugcaGCaGCGAGACGCGUugGACcagUGGu -3'
miRNA:   3'- -CGCg----CG-CGUUUUGCGCG--UUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 56113 0.67 0.995547
Target:  5'- gGCG-GCGaCAuguGCGUGCAGCaagUGGa -3'
miRNA:   3'- -CGCgCGC-GUuu-UGCGCGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 57528 0.67 0.991891
Target:  5'- gGCGCGCaaacuguuGCAGcgUGCGCAGCg----- -3'
miRNA:   3'- -CGCGCG--------CGUUuuGCGCGUUGauaacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.