miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 114732 0.67 0.994792
Target:  5'- cCGUGUGCAAAACGgcuCGCAAUUGc--- -3'
miRNA:   3'- cGCGCGCGUUUUGC---GCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 113941 0.67 0.991891
Target:  5'- aGCGCG-GCGGAugGCGCAc------- -3'
miRNA:   3'- -CGCGCgCGUUUugCGCGUugauaacc -5'
21341 5' -49.2 NC_004778.3 + 112390 0.75 0.784305
Target:  5'- -aGCGCGCGGu-CGCGCAGCUua-GGc -3'
miRNA:   3'- cgCGCGCGUUuuGCGCGUUGAuaaCC- -5'
21341 5' -49.2 NC_004778.3 + 111905 0.68 0.99068
Target:  5'- cGCGCuGUGCGugauCGUGCAGuagAUUGGa -3'
miRNA:   3'- -CGCG-CGCGUuuu-GCGCGUUga-UAACC- -5'
21341 5' -49.2 NC_004778.3 + 111747 0.74 0.847098
Target:  5'- gGCGCGCGUAAcaccGCGCGCcguccguGACU-UUGGc -3'
miRNA:   3'- -CGCGCGCGUUu---UGCGCG-------UUGAuAACC- -5'
21341 5' -49.2 NC_004778.3 + 111598 0.7 0.956614
Target:  5'- gGCGCGCGguGuuACGCGCGccgaguacgcaauggGCguuUUGGc -3'
miRNA:   3'- -CGCGCGCguUu-UGCGCGU---------------UGau-AACC- -5'
21341 5' -49.2 NC_004778.3 + 110106 0.69 0.980181
Target:  5'- uGgGCGCGCc-GACGUGCAAaugGUUGc -3'
miRNA:   3'- -CgCGCGCGuuUUGCGCGUUga-UAACc -5'
21341 5' -49.2 NC_004778.3 + 109968 0.72 0.919978
Target:  5'- gGCGCGCcCAuuACGUGCGACgacaagcUGGu -3'
miRNA:   3'- -CGCGCGcGUuuUGCGCGUUGaua----ACC- -5'
21341 5' -49.2 NC_004778.3 + 108420 0.66 0.996209
Target:  5'- cGCG-GCGCAGgugGACGCGCugguGCgccgcGGg -3'
miRNA:   3'- -CGCgCGCGUU---UUGCGCGu---UGauaa-CC- -5'
21341 5' -49.2 NC_004778.3 + 107943 0.67 0.994792
Target:  5'- cGCuaGCGCAGAcgaGCGCAACg----- -3'
miRNA:   3'- -CGcgCGCGUUUug-CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 107759 0.67 0.993937
Target:  5'- uGCGCGCGCGucaaugucacuGAcCGUGCGuACg--UGGc -3'
miRNA:   3'- -CGCGCGCGU-----------UUuGCGCGU-UGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 107700 0.69 0.972133
Target:  5'- gGCGCGCugcucugcgguaaGCGAcGCGUGCAua-AUUGGg -3'
miRNA:   3'- -CGCGCG-------------CGUUuUGCGCGUugaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 107622 0.67 0.993937
Target:  5'- cGCGCGCGCAAcuagacaaAugGCGUGAg------ -3'
miRNA:   3'- -CGCGCGCGUU--------UugCGCGUUgauaacc -5'
21341 5' -49.2 NC_004778.3 + 107399 0.67 0.994792
Target:  5'- -aGCcCGCAAAACGUuuaGCAuUUGUUGGu -3'
miRNA:   3'- cgCGcGCGUUUUGCG---CGUuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 106626 0.67 0.993937
Target:  5'- gGCGUGuCGCAAAcGCuGCGCAGCg----- -3'
miRNA:   3'- -CGCGC-GCGUUU-UG-CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 106606 0.83 0.377831
Target:  5'- uGCGCGCGCAGcGCGCuCAGCgcGUUGGa -3'
miRNA:   3'- -CGCGCGCGUUuUGCGcGUUGa-UAACC- -5'
21341 5' -49.2 NC_004778.3 + 106468 1.13 0.006727
Target:  5'- uGCGCGCGCAAAACGCGCAACUAUUGGc -3'
miRNA:   3'- -CGCGCGCGUUUUGCGCGUUGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 106334 0.7 0.962685
Target:  5'- uUGCGCGCAAagacaaauaaugGACGCGCuggaaaaaAUUGGa -3'
miRNA:   3'- cGCGCGCGUU------------UUGCGCGuuga----UAACC- -5'
21341 5' -49.2 NC_004778.3 + 105149 0.69 0.980181
Target:  5'- gGCGC-CGCG--GCGCGC--UUGUUGGc -3'
miRNA:   3'- -CGCGcGCGUuuUGCGCGuuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 104476 0.69 0.977802
Target:  5'- cGCuGCGUGCAAcaccucGACGCGUAuu--UUGGg -3'
miRNA:   3'- -CG-CGCGCGUU------UUGCGCGUugauAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.