miRNA display CGI


Results 61 - 80 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 89106 0.69 0.982364
Target:  5'- uGCGCGCGC---ACGCGCuuccacucAACUAc--- -3'
miRNA:   3'- -CGCGCGCGuuuUGCGCG--------UUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 88962 0.74 0.830714
Target:  5'- aGCGCGUGC---GCGCGCAugucuacaaGCUuuUUGGg -3'
miRNA:   3'- -CGCGCGCGuuuUGCGCGU---------UGAu-AACC- -5'
21341 5' -49.2 NC_004778.3 + 88662 0.66 0.997293
Target:  5'- uGCGCG-GUugacGGugGCGCAAUUGgacgGGa -3'
miRNA:   3'- -CGCGCgCGu---UUugCGCGUUGAUaa--CC- -5'
21341 5' -49.2 NC_004778.3 + 88219 0.69 0.977553
Target:  5'- gGCGCGgccgcccgucaaaCGCGAAaccACGUGCGACggugUGGc -3'
miRNA:   3'- -CGCGC-------------GCGUUU---UGCGCGUUGaua-ACC- -5'
21341 5' -49.2 NC_004778.3 + 88148 0.67 0.991891
Target:  5'- -aGCGCGCAcaguuuGAACGgGC-GCUGUUa- -3'
miRNA:   3'- cgCGCGCGU------UUUGCgCGuUGAUAAcc -5'
21341 5' -49.2 NC_004778.3 + 88010 0.66 0.997293
Target:  5'- uGUGCGCGCucAGACuGCaCAGCguacgcGUUGGu -3'
miRNA:   3'- -CGCGCGCGu-UUUG-CGcGUUGa-----UAACC- -5'
21341 5' -49.2 NC_004778.3 + 87920 0.68 0.99068
Target:  5'- aCGuCGCGCAacagacaagucGAugGCGCGGgcAUUGGu -3'
miRNA:   3'- cGC-GCGCGU-----------UUugCGCGUUgaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 86079 0.68 0.984361
Target:  5'- uCGCuGCGUcAGGCGUGCcGCUAaUGGu -3'
miRNA:   3'- cGCG-CGCGuUUUGCGCGuUGAUaACC- -5'
21341 5' -49.2 NC_004778.3 + 84153 0.71 0.9463
Target:  5'- aGCaUGCGCGucAgGCGUuGCUAUUGGa -3'
miRNA:   3'- -CGcGCGCGUuuUgCGCGuUGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 83621 0.66 0.996789
Target:  5'- aGCGguaCGCGgacaAAGACGuCGCAAUUGUUGu -3'
miRNA:   3'- -CGC---GCGCg---UUUUGC-GCGUUGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 83266 0.68 0.989331
Target:  5'- uGCaGaCGCGCGGAACGgCGCGGCg----- -3'
miRNA:   3'- -CG-C-GCGCGUUUUGC-GCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 82415 0.73 0.864294
Target:  5'- aGCGUGCGCAAcguuUGCaGCAGCgaAUUGGu -3'
miRNA:   3'- -CGCGCGCGUUuu--GCG-CGUUGa-UAACC- -5'
21341 5' -49.2 NC_004778.3 + 80430 0.67 0.991891
Target:  5'- gGCGCcagcCGCAccGCGCGCAACg----- -3'
miRNA:   3'- -CGCGc---GCGUuuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 80300 0.69 0.976278
Target:  5'- cGUGCGCGUGAAacagugucccgucccGuCGCGCGACUGg--- -3'
miRNA:   3'- -CGCGCGCGUUU---------------U-GCGCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 77737 0.67 0.992973
Target:  5'- cCGCGCGCAc--CGaGCGACUGUUu- -3'
miRNA:   3'- cGCGCGCGUuuuGCgCGUUGAUAAcc -5'
21341 5' -49.2 NC_004778.3 + 77525 0.76 0.764607
Target:  5'- cGCGUGCGCAuugcaccAGCGCGCGGCg----- -3'
miRNA:   3'- -CGCGCGCGUu------UUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 76703 0.67 0.99463
Target:  5'- cGCGCGCuaGCGAAgguGCGCGaaggcauggucaAAgUAUUGGc -3'
miRNA:   3'- -CGCGCG--CGUUU---UGCGCg-----------UUgAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 75792 0.7 0.958965
Target:  5'- cGCaGCGUGCAAguugGACGCGCGAgUGc--- -3'
miRNA:   3'- -CG-CGCGCGUU----UUGCGCGUUgAUaacc -5'
21341 5' -49.2 NC_004778.3 + 73644 0.68 0.989331
Target:  5'- aGCGUGCacGCGGAACGaCGUAGCUc---- -3'
miRNA:   3'- -CGCGCG--CGUUUUGC-GCGUUGAuaacc -5'
21341 5' -49.2 NC_004778.3 + 73523 0.7 0.969409
Target:  5'- --aCGCGCAAuucggcGGCGCaGCAGCUuuuAUUGGa -3'
miRNA:   3'- cgcGCGCGUU------UUGCG-CGUUGA---UAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.