miRNA display CGI


Results 81 - 100 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 72512 0.68 0.989331
Target:  5'- uGCGCGCGUccAAGucgGCGCAcuugaccaaACUGUUGu -3'
miRNA:   3'- -CGCGCGCG--UUUug-CGCGU---------UGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 70485 0.67 0.991891
Target:  5'- uGCGCGaCGCGuaucacauuuGCGCGgAugUAgcagUGGa -3'
miRNA:   3'- -CGCGC-GCGUuu--------UGCGCgUugAUa---ACC- -5'
21341 5' -49.2 NC_004778.3 + 70332 0.66 0.996735
Target:  5'- uCGCGCGCAAAcuugcggggagucGCGCugucgaGCAAUg--UGGu -3'
miRNA:   3'- cGCGCGCGUUU-------------UGCG------CGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 70164 0.67 0.994792
Target:  5'- aUGCGCGCcaGAAugGCGUcGCUGc--- -3'
miRNA:   3'- cGCGCGCG--UUUugCGCGuUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 70118 0.68 0.987193
Target:  5'- gGCGCGCGCAuucgguaccuagcAGCGCGCuuUUAa--- -3'
miRNA:   3'- -CGCGCGCGUu------------UUGCGCGuuGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 69982 0.7 0.958965
Target:  5'- cGCGCGCccgccGCAAAACcUGCAACUGg--- -3'
miRNA:   3'- -CGCGCG-----CGUUUUGcGCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 69946 0.68 0.987835
Target:  5'- uGC-CGCGCuuaAAAGCGCGCuGCUAg--- -3'
miRNA:   3'- -CGcGCGCG---UUUUGCGCGuUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 69699 0.72 0.901009
Target:  5'- aGCGUGUGCAAGACcaaccuGCGCGACg----- -3'
miRNA:   3'- -CGCGCGCGUUUUG------CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 68661 0.66 0.997293
Target:  5'- -aGUGCGUuccAACGCGCGugUGUc-- -3'
miRNA:   3'- cgCGCGCGuu-UUGCGCGUugAUAacc -5'
21341 5' -49.2 NC_004778.3 + 68573 0.67 0.995547
Target:  5'- uUGCGCGCAAGAUGUuguuuuGCAAauugaccaGUUGGu -3'
miRNA:   3'- cGCGCGCGUUUUGCG------CGUUga------UAACC- -5'
21341 5' -49.2 NC_004778.3 + 63872 0.69 0.972424
Target:  5'- -gGCGCGCAcGACGUGC-GCgugAUUGc -3'
miRNA:   3'- cgCGCGCGUuUUGCGCGuUGa--UAACc -5'
21341 5' -49.2 NC_004778.3 + 62887 0.67 0.993937
Target:  5'- aGCGCcaugucgcuuGC-CAAGACGgGCGACg--UGGg -3'
miRNA:   3'- -CGCG----------CGcGUUUUGCgCGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 62220 0.69 0.972424
Target:  5'- cCGCGCGCGAGuCGUGgGGCUcaaGGa -3'
miRNA:   3'- cGCGCGCGUUUuGCGCgUUGAuaaCC- -5'
21341 5' -49.2 NC_004778.3 + 61784 0.72 0.901009
Target:  5'- gGCGCGCGCu-GGCuGCGCGGCg----- -3'
miRNA:   3'- -CGCGCGCGuuUUG-CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 61647 0.74 0.821796
Target:  5'- aGCGCGCGCcAAcgccGCGCGCAuGCUGg--- -3'
miRNA:   3'- -CGCGCGCGuUU----UGCGCGU-UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 60500 0.74 0.838569
Target:  5'- -gGCGCGCGAAaucuacGCGCGCAACccuaccgUGUUGc -3'
miRNA:   3'- cgCGCGCGUUU------UGCGCGUUG-------AUAACc -5'
21341 5' -49.2 NC_004778.3 + 60407 0.68 0.987835
Target:  5'- aGCGgGCGUAGAGauggaacgccCGCGCAGCa----- -3'
miRNA:   3'- -CGCgCGCGUUUU----------GCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 60349 0.78 0.659995
Target:  5'- uGCGCGCGUAGAuuucGCGCGcCAGCUccagcgguUUGGu -3'
miRNA:   3'- -CGCGCGCGUUU----UGCGC-GUUGAu-------AACC- -5'
21341 5' -49.2 NC_004778.3 + 59739 0.66 0.998106
Target:  5'- gGCGCGCGUAuuGAAaauguuucuugcCGgGCAACUGg--- -3'
miRNA:   3'- -CGCGCGCGU--UUU------------GCgCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 58294 0.72 0.913918
Target:  5'- gGCGCGCugggcuuuGCAGgcgucGGCGCGUuuAACUcgUGGg -3'
miRNA:   3'- -CGCGCG--------CGUU-----UUGCGCG--UUGAuaACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.