Results 41 - 60 of 223 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 47989 | 0.77 | 0.70272 |
Target: 5'- aCGCGCGCAc-GCGCGCAACagacAUUGa -3' miRNA: 3'- cGCGCGCGUuuUGCGCGUUGa---UAACc -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 25065 | 0.77 | 0.679309 |
Target: 5'- aUGUGCGC-AAACGCGCAGCUucuaucgcauauUUGGg -3' miRNA: 3'- cGCGCGCGuUUUGCGCGUUGAu-----------AACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 60349 | 0.78 | 0.659995 |
Target: 5'- uGCGCGCGUAGAuuucGCGCGcCAGCUccagcgguUUGGu -3' miRNA: 3'- -CGCGCGCGUUU----UGCGC-GUUGAu-------AACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 124564 | 0.78 | 0.626573 |
Target: 5'- aGCGCGCGCcGAgucacguaggcgcGCGCGCAACUuuuUUGc -3' miRNA: 3'- -CGCGCGCGuUU-------------UGCGCGUUGAu--AACc -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 31250 | 0.79 | 0.593195 |
Target: 5'- gGCGCGCGCAccucgcgccGAgaaacuugcguucGCGCGCGACUGcuccgacUUGGa -3' miRNA: 3'- -CGCGCGCGU---------UU-------------UGCGCGUUGAU-------AACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 88962 | 0.74 | 0.830714 |
Target: 5'- aGCGCGUGC---GCGCGCAugucuacaaGCUuuUUGGg -3' miRNA: 3'- -CGCGCGCGuuuUGCGCGU---------UGAu-AACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 17036 | 0.74 | 0.839431 |
Target: 5'- aGUGCagauGUGCAAAAUGCGCAACUcggcGGg -3' miRNA: 3'- -CGCG----CGCGUUUUGCGCGUUGAuaa-CC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 124084 | 0.72 | 0.913918 |
Target: 5'- -gGCGCGCugauGCGCGCggUUGgcGGc -3' miRNA: 3'- cgCGCGCGuuu-UGCGCGuuGAUaaCC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 10268 | 0.72 | 0.910155 |
Target: 5'- uGCGCGCGgGAccggcGGCGCauugcaaaggcgcucGCGACUucGUUGGg -3' miRNA: 3'- -CGCGCGCgUU-----UUGCG---------------CGUUGA--UAACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 40529 | 0.72 | 0.907595 |
Target: 5'- gGCGCGuCGCAuucauugGCGCGACU-UUGGu -3' miRNA: 3'- -CGCGC-GCGUuuug---CGCGUUGAuAACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 19199 | 0.72 | 0.901009 |
Target: 5'- cGCGCGgGCAccuugguGACGUGCuugAACUGaUGGg -3' miRNA: 3'- -CGCGCgCGUu------UUGCGCG---UUGAUaACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 6946 | 0.72 | 0.901009 |
Target: 5'- uGUGCGCGCuaauAAACuuGUcGCUGUUGGc -3' miRNA: 3'- -CGCGCGCGu---UUUGcgCGuUGAUAACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 69699 | 0.72 | 0.901009 |
Target: 5'- aGCGUGUGCAAGACcaaccuGCGCGACg----- -3' miRNA: 3'- -CGCGCGCGUUUUG------CGCGUUGauaacc -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 91184 | 0.73 | 0.894166 |
Target: 5'- gGCGCuCGCGuucACGCGCAcggaUAUUGGa -3' miRNA: 3'- -CGCGcGCGUuu-UGCGCGUug--AUAACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 95406 | 0.73 | 0.884889 |
Target: 5'- aGCGCGuCGCAGcuuagcGACGCGCGcuacGCUGUcaugcuguacccguUGGu -3' miRNA: 3'- -CGCGC-GCGUU------UUGCGCGU----UGAUA--------------ACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 82415 | 0.73 | 0.864294 |
Target: 5'- aGCGUGCGCAAcguuUGCaGCAGCgaAUUGGu -3' miRNA: 3'- -CGCGCGCGUUuu--GCG-CGUUGa-UAACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 34179 | 0.73 | 0.864294 |
Target: 5'- uGCGCaGCauGCAGGACGUGCugugGCUGUUGu -3' miRNA: 3'- -CGCG-CG--CGUUUUGCGCGu---UGAUAACc -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 29339 | 0.74 | 0.847939 |
Target: 5'- gGCGCGCGCugggguGCGCcaaGCGGCUGUa-- -3' miRNA: 3'- -CGCGCGCGuuu---UGCG---CGUUGAUAacc -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 38357 | 0.74 | 0.839431 |
Target: 5'- cGCGCGCGCu-AGCGCGCAu------- -3' miRNA: 3'- -CGCGCGCGuuUUGCGCGUugauaacc -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 23750 | 0.74 | 0.839431 |
Target: 5'- aGCGCGUGCGccGAUGCuuGCAGCUAaagUGGc -3' miRNA: 3'- -CGCGCGCGUu-UUGCG--CGUUGAUa--ACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home