Results 61 - 80 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 34179 | 0.73 | 0.864294 |
Target: 5'- uGCGCaGCauGCAGGACGUGCugugGCUGUUGu -3' miRNA: 3'- -CGCG-CG--CGUUUUGCGCGu---UGAUAACc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 82415 | 0.73 | 0.864294 |
Target: 5'- aGCGUGCGCAAcguuUGCaGCAGCgaAUUGGu -3' miRNA: 3'- -CGCGCGCGUUuu--GCG-CGUUGa-UAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 14363 | 0.72 | 0.919978 |
Target: 5'- aUGCGCuGCAAcGCGCGCGACa----- -3' miRNA: 3'- cGCGCG-CGUUuUGCGCGUUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 5101 | 0.71 | 0.931301 |
Target: 5'- cUGUGCGC-GAACGUGCAGCUcgcgcUGGc -3' miRNA: 3'- cGCGCGCGuUUUGCGCGUUGAua---ACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 17107 | 0.71 | 0.931301 |
Target: 5'- uGUGCGCGCG--GCGCGCcuACcg-UGGc -3' miRNA: 3'- -CGCGCGCGUuuUGCGCGu-UGauaACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 47466 | 0.71 | 0.9463 |
Target: 5'- cGUGCGCGuCAAcGAC-CGCGACaccgAUUGGa -3' miRNA: 3'- -CGCGCGC-GUU-UUGcGCGUUGa---UAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 84153 | 0.71 | 0.9463 |
Target: 5'- aGCaUGCGCGucAgGCGUuGCUAUUGGa -3' miRNA: 3'- -CGcGCGCGUuuUgCGCGuUGAUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 9519 | 0.71 | 0.950777 |
Target: 5'- cGCGCGCGUAucgacgauuuGCGCGCcgUU-UUGGa -3' miRNA: 3'- -CGCGCGCGUuu--------UGCGCGuuGAuAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 95005 | 0.71 | 0.950777 |
Target: 5'- cGCGCGCGCcguGCGC-CGACg---GGc -3' miRNA: 3'- -CGCGCGCGuuuUGCGcGUUGauaaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 25269 | 0.7 | 0.953757 |
Target: 5'- -aGCGCauaaucuccacuuuGCAAAACGCGCAGCg----- -3' miRNA: 3'- cgCGCG--------------CGUUUUGCGCGUUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 109968 | 0.72 | 0.919978 |
Target: 5'- gGCGCGCcCAuuACGUGCGACgacaagcUGGu -3' miRNA: 3'- -CGCGCGcGUuuUGCGCGUUGaua----ACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 8815 | 0.72 | 0.913918 |
Target: 5'- gGCGCGCucaGCGAAugGCGCcuACUAa--- -3' miRNA: 3'- -CGCGCG---CGUUUugCGCGu-UGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 95406 | 0.73 | 0.884889 |
Target: 5'- aGCGCGuCGCAGcuuagcGACGCGCGcuacGCUGUcaugcuguacccguUGGu -3' miRNA: 3'- -CGCGC-GCGUU------UUGCGCGU----UGAUA--------------ACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 91184 | 0.73 | 0.894166 |
Target: 5'- gGCGCuCGCGuucACGCGCAcggaUAUUGGa -3' miRNA: 3'- -CGCGcGCGUuu-UGCGCGUug--AUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 69699 | 0.72 | 0.901009 |
Target: 5'- aGCGUGUGCAAGACcaaccuGCGCGACg----- -3' miRNA: 3'- -CGCGCGCGUUUUG------CGCGUUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 6946 | 0.72 | 0.901009 |
Target: 5'- uGUGCGCGCuaauAAACuuGUcGCUGUUGGc -3' miRNA: 3'- -CGCGCGCGu---UUUGcgCGuUGAUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 19199 | 0.72 | 0.901009 |
Target: 5'- cGCGCGgGCAccuugguGACGUGCuugAACUGaUGGg -3' miRNA: 3'- -CGCGCgCGUu------UUGCGCG---UUGAUaACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 40529 | 0.72 | 0.907595 |
Target: 5'- gGCGCGuCGCAuucauugGCGCGACU-UUGGu -3' miRNA: 3'- -CGCGC-GCGUuuug---CGCGUUGAuAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 10268 | 0.72 | 0.910155 |
Target: 5'- uGCGCGCGgGAccggcGGCGCauugcaaaggcgcucGCGACUucGUUGGg -3' miRNA: 3'- -CGCGCGCgUU-----UUGCG---------------CGUUGA--UAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 124084 | 0.72 | 0.913918 |
Target: 5'- -gGCGCGCugauGCGCGCggUUGgcGGc -3' miRNA: 3'- cgCGCGCGuuu-UGCGCGuuGAUaaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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