miRNA display CGI


Results 81 - 100 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 47408 0.7 0.958965
Target:  5'- cGCGCGCGUGGAccACGCGCcACc----- -3'
miRNA:   3'- -CGCGCGCGUUU--UGCGCGuUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 69982 0.7 0.958965
Target:  5'- cGCGCGCccgccGCAAAACcUGCAACUGg--- -3'
miRNA:   3'- -CGCGCG-----CGUUUUGcGCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 106334 0.7 0.962685
Target:  5'- uUGCGCGCAAagacaaauaaugGACGCGCuggaaaaaAUUGGa -3'
miRNA:   3'- cGCGCGCGUU------------UUGCGCGuuga----UAACC- -5'
21341 5' -49.2 NC_004778.3 + 27453 0.7 0.964801
Target:  5'- cGCGUGCGCGAGcuugaauugguuuCGgGCAACgugccgUGGg -3'
miRNA:   3'- -CGCGCGCGUUUu------------GCgCGUUGaua---ACC- -5'
21341 5' -49.2 NC_004778.3 + 30749 0.7 0.966165
Target:  5'- aGCGCGaagcCAAAGCGCGcCAAUUuuugUGGg -3'
miRNA:   3'- -CGCGCgc--GUUUUGCGC-GUUGAua--ACC- -5'
21341 5' -49.2 NC_004778.3 + 98762 0.7 0.96749
Target:  5'- cGCGCGUGCAAgccgccaccauccccAGCGaCGCGACa----- -3'
miRNA:   3'- -CGCGCGCGUU---------------UUGC-GCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 21245 0.7 0.969409
Target:  5'- aGC-CGUGCAGucCGCGCGGCagGUUGa -3'
miRNA:   3'- -CGcGCGCGUUuuGCGCGUUGa-UAACc -5'
21341 5' -49.2 NC_004778.3 + 25269 0.7 0.953757
Target:  5'- -aGCGCauaaucuccacuuuGCAAAACGCGCAGCg----- -3'
miRNA:   3'- cgCGCG--------------CGUUUUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 95005 0.71 0.950777
Target:  5'- cGCGCGCGCcguGCGC-CGACg---GGc -3'
miRNA:   3'- -CGCGCGCGuuuUGCGcGUUGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 9519 0.71 0.950777
Target:  5'- cGCGCGCGUAucgacgauuuGCGCGCcgUU-UUGGa -3'
miRNA:   3'- -CGCGCGCGUuu--------UGCGCGuuGAuAACC- -5'
21341 5' -49.2 NC_004778.3 + 10268 0.72 0.910155
Target:  5'- uGCGCGCGgGAccggcGGCGCauugcaaaggcgcucGCGACUucGUUGGg -3'
miRNA:   3'- -CGCGCGCgUU-----UUGCG---------------CGUUGA--UAACC- -5'
21341 5' -49.2 NC_004778.3 + 124084 0.72 0.913918
Target:  5'- -gGCGCGCugauGCGCGCggUUGgcGGc -3'
miRNA:   3'- cgCGCGCGuuu-UGCGCGuuGAUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 8815 0.72 0.913918
Target:  5'- gGCGCGCucaGCGAAugGCGCcuACUAa--- -3'
miRNA:   3'- -CGCGCG---CGUUUugCGCGu-UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 109968 0.72 0.919978
Target:  5'- gGCGCGCcCAuuACGUGCGACgacaagcUGGu -3'
miRNA:   3'- -CGCGCGcGUuuUGCGCGUUGaua----ACC- -5'
21341 5' -49.2 NC_004778.3 + 14363 0.72 0.919978
Target:  5'- aUGCGCuGCAAcGCGCGCGACa----- -3'
miRNA:   3'- cGCGCG-CGUUuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 5101 0.71 0.931301
Target:  5'- cUGUGCGC-GAACGUGCAGCUcgcgcUGGc -3'
miRNA:   3'- cGCGCGCGuUUUGCGCGUUGAua---ACC- -5'
21341 5' -49.2 NC_004778.3 + 17107 0.71 0.931301
Target:  5'- uGUGCGCGCG--GCGCGCcuACcg-UGGc -3'
miRNA:   3'- -CGCGCGCGUuuUGCGCGu-UGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 47466 0.71 0.9463
Target:  5'- cGUGCGCGuCAAcGAC-CGCGACaccgAUUGGa -3'
miRNA:   3'- -CGCGCGC-GUU-UUGcGCGUUGa---UAACC- -5'
21341 5' -49.2 NC_004778.3 + 84153 0.71 0.9463
Target:  5'- aGCaUGCGCGucAgGCGUuGCUAUUGGa -3'
miRNA:   3'- -CGcGCGCGUuuUgCGCGuUGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 35184 0.7 0.969409
Target:  5'- gGUGUGCGCAcuGCaaaCGCAGCUugacuUUGGc -3'
miRNA:   3'- -CGCGCGCGUuuUGc--GCGUUGAu----AACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.