miRNA display CGI


Results 101 - 120 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 69982 0.7 0.958965
Target:  5'- cGCGCGCccgccGCAAAACcUGCAACUGg--- -3'
miRNA:   3'- -CGCGCG-----CGUUUUGcGCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 47408 0.7 0.958965
Target:  5'- cGCGCGCGUGGAccACGCGCcACc----- -3'
miRNA:   3'- -CGCGCGCGUUU--UGCGCGuUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 109968 0.72 0.919978
Target:  5'- gGCGCGCcCAuuACGUGCGACgacaagcUGGu -3'
miRNA:   3'- -CGCGCGcGUuuUGCGCGUUGaua----ACC- -5'
21341 5' -49.2 NC_004778.3 + 14363 0.72 0.919978
Target:  5'- aUGCGCuGCAAcGCGCGCGACa----- -3'
miRNA:   3'- cGCGCG-CGUUuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 5101 0.71 0.931301
Target:  5'- cUGUGCGC-GAACGUGCAGCUcgcgcUGGc -3'
miRNA:   3'- cGCGCGCGuUUUGCGCGUUGAua---ACC- -5'
21341 5' -49.2 NC_004778.3 + 17107 0.71 0.931301
Target:  5'- uGUGCGCGCG--GCGCGCcuACcg-UGGc -3'
miRNA:   3'- -CGCGCGCGUuuUGCGCGu-UGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 47466 0.71 0.9463
Target:  5'- cGUGCGCGuCAAcGAC-CGCGACaccgAUUGGa -3'
miRNA:   3'- -CGCGCGC-GUU-UUGcGCGUUGa---UAACC- -5'
21341 5' -49.2 NC_004778.3 + 84153 0.71 0.9463
Target:  5'- aGCaUGCGCGucAgGCGUuGCUAUUGGa -3'
miRNA:   3'- -CGcGCGCGUuuUgCGCGuUGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 9519 0.71 0.950777
Target:  5'- cGCGCGCGUAucgacgauuuGCGCGCcgUU-UUGGa -3'
miRNA:   3'- -CGCGCGCGUuu--------UGCGCGuuGAuAACC- -5'
21341 5' -49.2 NC_004778.3 + 95005 0.71 0.950777
Target:  5'- cGCGCGCGCcguGCGC-CGACg---GGc -3'
miRNA:   3'- -CGCGCGCGuuuUGCGcGUUGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 25269 0.7 0.953757
Target:  5'- -aGCGCauaaucuccacuuuGCAAAACGCGCAGCg----- -3'
miRNA:   3'- cgCGCG--------------CGUUUUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 33383 0.7 0.954997
Target:  5'- cGCGC-CGUcuuuGGACGCGCccaacCUGUUGGa -3'
miRNA:   3'- -CGCGcGCGu---UUUGCGCGuu---GAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 111598 0.7 0.956614
Target:  5'- gGCGCGCGguGuuACGCGCGccgaguacgcaauggGCguuUUGGc -3'
miRNA:   3'- -CGCGCGCguUu-UGCGCGU---------------UGau-AACC- -5'
21341 5' -49.2 NC_004778.3 + 93626 0.7 0.958965
Target:  5'- -gGCGCGCGAAuucaauugucuGCGCGCcAUUAcgGGc -3'
miRNA:   3'- cgCGCGCGUUU-----------UGCGCGuUGAUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 46563 0.66 0.99773
Target:  5'- uGUGCGaCGCGGcACGCGcCAAagagUGGc -3'
miRNA:   3'- -CGCGC-GCGUUuUGCGC-GUUgauaACC- -5'
21341 5' -49.2 NC_004778.3 + 26138 0.66 0.99773
Target:  5'- -aGCGUGCG--ACGUGCAGCa----- -3'
miRNA:   3'- cgCGCGCGUuuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 8116 0.66 0.998106
Target:  5'- aGCGaCGUGC---ACGUGCuACcAUUGGa -3'
miRNA:   3'- -CGC-GCGCGuuuUGCGCGuUGaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 96850 0.66 0.998106
Target:  5'- cGCGCGCGCAucuuaucauGACaGCcgGCGAUUAUaaaaGGa -3'
miRNA:   3'- -CGCGCGCGUu--------UUG-CG--CGUUGAUAa---CC- -5'
21341 5' -49.2 NC_004778.3 + 93384 0.66 0.998106
Target:  5'- uCGCG-GC-GAugGCGCcGCUGaUGGa -3'
miRNA:   3'- cGCGCgCGuUUugCGCGuUGAUaACC- -5'
21341 5' -49.2 NC_004778.3 + 106606 0.83 0.377831
Target:  5'- uGCGCGCGCAGcGCGCuCAGCgcGUUGGa -3'
miRNA:   3'- -CGCGCGCGUUuUGCGcGUUGa-UAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.