Results 121 - 140 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 2137 | 0.66 | 0.996209 |
Target: 5'- uGCGC-CGCA--GCGUGCAcgaGCUGUg-- -3' miRNA: 3'- -CGCGcGCGUuuUGCGCGU---UGAUAacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 4607 | 0.66 | 0.996209 |
Target: 5'- cGCGUGC-CAGGcCGCGCGAUUcc-GGa -3' miRNA: 3'- -CGCGCGcGUUUuGCGCGUUGAuaaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 90785 | 0.66 | 0.996209 |
Target: 5'- gGCGUGCGC-AAACGUGUuuAC-GUUGa -3' miRNA: 3'- -CGCGCGCGuUUUGCGCGu-UGaUAACc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 15049 | 0.67 | 0.995547 |
Target: 5'- aCGCGCuaaGCuuacAAUGCGCGauaaaacaaACUAUUGGc -3' miRNA: 3'- cGCGCG---CGuu--UUGCGCGU---------UGAUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 25690 | 0.67 | 0.995547 |
Target: 5'- -gGCGCGCG--AUGCGCGAUaAgcGGu -3' miRNA: 3'- cgCGCGCGUuuUGCGCGUUGaUaaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 56113 | 0.67 | 0.995547 |
Target: 5'- gGCG-GCGaCAuguGCGUGCAGCaagUGGa -3' miRNA: 3'- -CGCgCGC-GUuu-UGCGCGUUGauaACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 114803 | 0.66 | 0.996789 |
Target: 5'- cCGUGCGCAAA-CGCuucGCGGCUGc--- -3' miRNA: 3'- cGCGCGCGUUUuGCG---CGUUGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 83621 | 0.66 | 0.996789 |
Target: 5'- aGCGguaCGCGgacaAAGACGuCGCAAUUGUUGu -3' miRNA: 3'- -CGC---GCGCg---UUUUGC-GCGUUGAUAACc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 38452 | 0.66 | 0.996789 |
Target: 5'- -gGCGCGCGGucGCGUGCGcGCUGg--- -3' miRNA: 3'- cgCGCGCGUUu-UGCGCGU-UGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 93384 | 0.66 | 0.998106 |
Target: 5'- uCGCG-GC-GAugGCGCcGCUGaUGGa -3' miRNA: 3'- cGCGCgCGuUUugCGCGuUGAUaACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 96850 | 0.66 | 0.998106 |
Target: 5'- cGCGCGCGCAucuuaucauGACaGCcgGCGAUUAUaaaaGGa -3' miRNA: 3'- -CGCGCGCGUu--------UUG-CG--CGUUGAUAa---CC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 8116 | 0.66 | 0.998106 |
Target: 5'- aGCGaCGUGC---ACGUGCuACcAUUGGa -3' miRNA: 3'- -CGC-GCGCGuuuUGCGCGuUGaUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 26138 | 0.66 | 0.99773 |
Target: 5'- -aGCGUGCG--ACGUGCAGCa----- -3' miRNA: 3'- cgCGCGCGUuuUGCGCGUUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 46563 | 0.66 | 0.99773 |
Target: 5'- uGUGCGaCGCGGcACGCGcCAAagagUGGc -3' miRNA: 3'- -CGCGC-GCGUUuUGCGC-GUUgauaACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 31862 | 0.66 | 0.997689 |
Target: 5'- cCGCGCaGCAAAACcgcaucgucgaguGCGaCAGCgaaAUUGGc -3' miRNA: 3'- cGCGCG-CGUUUUG-------------CGC-GUUGa--UAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 38315 | 0.66 | 0.997689 |
Target: 5'- gGCGCGgGUAgcguggaggugucGAGCgGCGCAGCg---GGc -3' miRNA: 3'- -CGCGCgCGU-------------UUUG-CGCGUUGauaaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 118934 | 0.66 | 0.997648 |
Target: 5'- uGUGCGCGCcGGcCGCGCcGCgcccgaagcgUGGc -3' miRNA: 3'- -CGCGCGCGuUUuGCGCGuUGaua-------ACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 9570 | 0.66 | 0.997606 |
Target: 5'- uGCGCGCcacgccaaacugcuGCAGuuuGCGCGCGuggugaaAUUGGu -3' miRNA: 3'- -CGCGCG--------------CGUUu--UGCGCGUuga----UAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 16951 | 0.66 | 0.997293 |
Target: 5'- cGCGCGCGCuguuCGauaugGCGACca-UGGg -3' miRNA: 3'- -CGCGCGCGuuuuGCg----CGUUGauaACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 38137 | 0.66 | 0.996789 |
Target: 5'- aCGUGUGCAugacugcuGACGCGCcGCUAc--- -3' miRNA: 3'- cGCGCGCGUu-------UUGCGCGuUGAUaacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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