miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 4607 0.66 0.996209
Target:  5'- cGCGUGC-CAGGcCGCGCGAUUcc-GGa -3'
miRNA:   3'- -CGCGCGcGUUUuGCGCGUUGAuaaCC- -5'
21341 5' -49.2 NC_004778.3 + 2595 0.66 0.996451
Target:  5'- gGCGUGcCGCAcucgggccacagguAACGCGCAAUaaagUGGu -3'
miRNA:   3'- -CGCGC-GCGUu-------------UUGCGCGUUGaua-ACC- -5'
21341 5' -49.2 NC_004778.3 + 16951 0.66 0.997293
Target:  5'- cGCGCGCGCuguuCGauaugGCGACca-UGGg -3'
miRNA:   3'- -CGCGCGCGuuuuGCg----CGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 8116 0.66 0.998106
Target:  5'- aGCGaCGUGC---ACGUGCuACcAUUGGa -3'
miRNA:   3'- -CGC-GCGCGuuuUGCGCGuUGaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 114732 0.67 0.994792
Target:  5'- cCGUGUGCAAAACGgcuCGCAAUUGc--- -3'
miRNA:   3'- cGCGCGCGUUUUGC---GCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 124444 0.67 0.995547
Target:  5'- gGCGcCGCGCuucagcauucuuGAAGCGCGCcgAGCUGc--- -3'
miRNA:   3'- -CGC-GCGCG------------UUUUGCGCG--UUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 89629 0.66 0.996789
Target:  5'- gGCGUuuuCGCAuuGGCGCGUuuUUAUUGGc -3'
miRNA:   3'- -CGCGc--GCGUu-UUGCGCGuuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 96850 0.66 0.998106
Target:  5'- cGCGCGCGCAucuuaucauGACaGCcgGCGAUUAUaaaaGGa -3'
miRNA:   3'- -CGCGCGCGUu--------UUG-CG--CGUUGAUAa---CC- -5'
21341 5' -49.2 NC_004778.3 + 56113 0.67 0.995547
Target:  5'- gGCG-GCGaCAuguGCGUGCAGCaagUGGa -3'
miRNA:   3'- -CGCgCGC-GUuu-UGCGCGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 93384 0.66 0.998106
Target:  5'- uCGCG-GC-GAugGCGCcGCUGaUGGa -3'
miRNA:   3'- cGCGCgCGuUUugCGCGuUGAUaACC- -5'
21341 5' -49.2 NC_004778.3 + 70332 0.66 0.996735
Target:  5'- uCGCGCGCAAAcuugcggggagucGCGCugucgaGCAAUg--UGGu -3'
miRNA:   3'- cGCGCGCGUUU-------------UGCG------CGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 90785 0.66 0.996209
Target:  5'- gGCGUGCGC-AAACGUGUuuAC-GUUGa -3'
miRNA:   3'- -CGCGCGCGuUUUGCGCGu-UGaUAACc -5'
21341 5' -49.2 NC_004778.3 + 114803 0.66 0.996789
Target:  5'- cCGUGCGCAAA-CGCuucGCGGCUGc--- -3'
miRNA:   3'- cGCGCGCGUUUuGCG---CGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 38137 0.66 0.996789
Target:  5'- aCGUGUGCAugacugcuGACGCGCcGCUAc--- -3'
miRNA:   3'- cGCGCGCGUu-------UUGCGCGuUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 38315 0.66 0.997689
Target:  5'- gGCGCGgGUAgcguggaggugucGAGCgGCGCAGCg---GGc -3'
miRNA:   3'- -CGCGCgCGU-------------UUUG-CGCGUUGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 26138 0.66 0.99773
Target:  5'- -aGCGUGCG--ACGUGCAGCa----- -3'
miRNA:   3'- cgCGCGCGUuuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 29348 0.67 0.993937
Target:  5'- cGCGUGCGCGAuuGGCuGCcgaGCGACgacccgUGGc -3'
miRNA:   3'- -CGCGCGCGUU--UUG-CG---CGUUGaua---ACC- -5'
21341 5' -49.2 NC_004778.3 + 107943 0.67 0.994792
Target:  5'- cGCuaGCGCAGAcgaGCGCAACg----- -3'
miRNA:   3'- -CGcgCGCGUUUug-CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 37500 0.67 0.994792
Target:  5'- uGC-CGUGCAAGua--GCAAUUGUUGGg -3'
miRNA:   3'- -CGcGCGCGUUUugcgCGUUGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 28551 0.67 0.994792
Target:  5'- aCGCGCuuuuGCAAAuCGCGCAAUUc--GGa -3'
miRNA:   3'- cGCGCG----CGUUUuGCGCGUUGAuaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.