miRNA display CGI


Results 41 - 60 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 107399 0.67 0.994792
Target:  5'- -aGCcCGCAAAACGUuuaGCAuUUGUUGGu -3'
miRNA:   3'- cgCGcGCGUUUUGCG---CGUuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 89629 0.66 0.996789
Target:  5'- gGCGUuuuCGCAuuGGCGCGUuuUUAUUGGc -3'
miRNA:   3'- -CGCGc--GCGUu-UUGCGCGuuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 96850 0.66 0.998106
Target:  5'- cGCGCGCGCAucuuaucauGACaGCcgGCGAUUAUaaaaGGa -3'
miRNA:   3'- -CGCGCGCGUu--------UUG-CG--CGUUGAUAa---CC- -5'
21341 5' -49.2 NC_004778.3 + 38252 0.67 0.994792
Target:  5'- gGCGUGCGCGcua-GCGUG-CUGUUGc -3'
miRNA:   3'- -CGCGCGCGUuuugCGCGUuGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 93384 0.66 0.998106
Target:  5'- uCGCG-GC-GAugGCGCcGCUGaUGGa -3'
miRNA:   3'- cGCGCgCGuUUugCGCGuUGAUaACC- -5'
21341 5' -49.2 NC_004778.3 + 95936 0.68 0.986182
Target:  5'- gGCGCaGCGCGGccGGCGCGCuGCcgcgcGGa -3'
miRNA:   3'- -CGCG-CGCGUU--UUGCGCGuUGauaa-CC- -5'
21341 5' -49.2 NC_004778.3 + 26138 0.66 0.99773
Target:  5'- -aGCGUGCG--ACGUGCAGCa----- -3'
miRNA:   3'- cgCGCGCGUuuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 60407 0.68 0.987835
Target:  5'- aGCGgGCGUAGAGauggaacgccCGCGCAGCa----- -3'
miRNA:   3'- -CGCgCGCGUUUU----------GCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 72512 0.68 0.989331
Target:  5'- uGCGCGCGUccAAGucgGCGCAcuugaccaaACUGUUGu -3'
miRNA:   3'- -CGCGCGCG--UUUug-CGCGU---------UGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 45299 0.68 0.99068
Target:  5'- cGCGauccaGCGCAuuuCGCGCGGCcg--GGu -3'
miRNA:   3'- -CGCg----CGCGUuuuGCGCGUUGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 57528 0.67 0.991891
Target:  5'- gGCGCGCaaacuguuGCAGcgUGCGCAGCg----- -3'
miRNA:   3'- -CGCGCG--------CGUUuuGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 29348 0.67 0.993937
Target:  5'- cGCGUGCGCGAuuGGCuGCcgaGCGACgacccgUGGc -3'
miRNA:   3'- -CGCGCGCGUU--UUG-CG---CGUUGaua---ACC- -5'
21341 5' -49.2 NC_004778.3 + 107943 0.67 0.994792
Target:  5'- cGCuaGCGCAGAcgaGCGCAACg----- -3'
miRNA:   3'- -CGcgCGCGUUUug-CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 70164 0.67 0.994792
Target:  5'- aUGCGCGCcaGAAugGCGUcGCUGc--- -3'
miRNA:   3'- cGCGCGCG--UUUugCGCGuUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 56113 0.67 0.995547
Target:  5'- gGCG-GCGaCAuguGCGUGCAGCaagUGGa -3'
miRNA:   3'- -CGCgCGC-GUuu-UGCGCGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 4607 0.66 0.996209
Target:  5'- cGCGUGC-CAGGcCGCGCGAUUcc-GGa -3'
miRNA:   3'- -CGCGCGcGUUUuGCGCGUUGAuaaCC- -5'
21341 5' -49.2 NC_004778.3 + 2595 0.66 0.996451
Target:  5'- gGCGUGcCGCAcucgggccacagguAACGCGCAAUaaagUGGu -3'
miRNA:   3'- -CGCGC-GCGUu-------------UUGCGCGUUGaua-ACC- -5'
21341 5' -49.2 NC_004778.3 + 114803 0.66 0.996789
Target:  5'- cCGUGCGCAAA-CGCuucGCGGCUGc--- -3'
miRNA:   3'- cGCGCGCGUUUuGCG---CGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 38137 0.66 0.996789
Target:  5'- aCGUGUGCAugacugcuGACGCGCcGCUAc--- -3'
miRNA:   3'- cGCGCGCGUu-------UUGCGCGuUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 38315 0.66 0.997689
Target:  5'- gGCGCGgGUAgcguggaggugucGAGCgGCGCAGCg---GGc -3'
miRNA:   3'- -CGCGCgCGU-------------UUUG-CGCGUUGauaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.