miRNA display CGI


Results 61 - 80 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 107943 0.67 0.994792
Target:  5'- cGCuaGCGCAGAcgaGCGCAACg----- -3'
miRNA:   3'- -CGcgCGCGUUUug-CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 107759 0.67 0.993937
Target:  5'- uGCGCGCGCGucaaugucacuGAcCGUGCGuACg--UGGc -3'
miRNA:   3'- -CGCGCGCGU-----------UUuGCGCGU-UGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 46563 0.66 0.99773
Target:  5'- uGUGCGaCGCGGcACGCGcCAAagagUGGc -3'
miRNA:   3'- -CGCGC-GCGUUuUGCGC-GUUgauaACC- -5'
21341 5' -49.2 NC_004778.3 + 118934 0.66 0.997648
Target:  5'- uGUGCGCGCcGGcCGCGCcGCgcccgaagcgUGGc -3'
miRNA:   3'- -CGCGCGCGuUUuGCGCGuUGaua-------ACC- -5'
21341 5' -49.2 NC_004778.3 + 38452 0.66 0.996789
Target:  5'- -gGCGCGCGGucGCGUGCGcGCUGg--- -3'
miRNA:   3'- cgCGCGCGUUu-UGCGCGU-UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 119261 0.66 0.996789
Target:  5'- cGCGCGuCGCGGucAACuuGCAACUGa--- -3'
miRNA:   3'- -CGCGC-GCGUU--UUGcgCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 101464 0.66 0.996209
Target:  5'- aUGCGCGuCAAggUGUGCGAUga--GGa -3'
miRNA:   3'- cGCGCGC-GUUuuGCGCGUUGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 90785 0.66 0.996209
Target:  5'- gGCGUGCGC-AAACGUGUuuAC-GUUGa -3'
miRNA:   3'- -CGCGCGCGuUUUGCGCGu-UGaUAACc -5'
21341 5' -49.2 NC_004778.3 + 124444 0.67 0.995547
Target:  5'- gGCGcCGCGCuucagcauucuuGAAGCGCGCcgAGCUGc--- -3'
miRNA:   3'- -CGC-GCGCG------------UUUUGCGCG--UUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 6392 0.67 0.994792
Target:  5'- cCGCGCuGCAAAAgGCcgaauccaaGCAGCUGUUu- -3'
miRNA:   3'- cGCGCG-CGUUUUgCG---------CGUUGAUAAcc -5'
21341 5' -49.2 NC_004778.3 + 103949 0.69 0.972424
Target:  5'- uUGCGCGCcacACGUGCAACcguucUUGGc -3'
miRNA:   3'- cGCGCGCGuuuUGCGCGUUGau---AACC- -5'
21341 5' -49.2 NC_004778.3 + 62220 0.69 0.972424
Target:  5'- cCGCGCGCGAGuCGUGgGGCUcaaGGa -3'
miRNA:   3'- cGCGCGCGUUUuGCGCgUUGAuaaCC- -5'
21341 5' -49.2 NC_004778.3 + 37284 0.68 0.99068
Target:  5'- aUGCGCGCAAAACGUcCGAa---UGGc -3'
miRNA:   3'- cGCGCGCGUUUUGCGcGUUgauaACC- -5'
21341 5' -49.2 NC_004778.3 + 87920 0.68 0.99068
Target:  5'- aCGuCGCGCAacagacaagucGAugGCGCGGgcAUUGGu -3'
miRNA:   3'- cGC-GCGCGU-----------UUugCGCGUUgaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 60407 0.68 0.987835
Target:  5'- aGCGgGCGUAGAGauggaacgccCGCGCAGCa----- -3'
miRNA:   3'- -CGCgCGCGUUUU----------GCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 95936 0.68 0.986182
Target:  5'- gGCGCaGCGCGGccGGCGCGCuGCcgcgcGGa -3'
miRNA:   3'- -CGCG-CGCGUU--UUGCGCGuUGauaa-CC- -5'
21341 5' -49.2 NC_004778.3 + 93781 0.68 0.984361
Target:  5'- -gGCGCGCAGAcaauugaauucGCGCGCcACgcacagcaUGGg -3'
miRNA:   3'- cgCGCGCGUUU-----------UGCGCGuUGaua-----ACC- -5'
21341 5' -49.2 NC_004778.3 + 45753 0.69 0.982364
Target:  5'- gGCGCGgcuaUGCAGAAgGCGCGccaggcGCUGgaGGa -3'
miRNA:   3'- -CGCGC----GCGUUUUgCGCGU------UGAUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 48880 0.69 0.980181
Target:  5'- cGUGCGUGCGAAcccguCGCcGCGGCUAc--- -3'
miRNA:   3'- -CGCGCGCGUUUu----GCG-CGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 40649 0.69 0.980181
Target:  5'- aGCGC-CGCAAGACGCa-AACUGUUc- -3'
miRNA:   3'- -CGCGcGCGUUUUGCGcgUUGAUAAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.