miRNA display CGI


Results 81 - 100 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 128953 0.68 0.99068
Target:  5'- uGUGCGCGUcaccUGCGUuuUUAUUGGg -3'
miRNA:   3'- -CGCGCGCGuuuuGCGCGuuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 73644 0.68 0.989331
Target:  5'- aGCGUGCacGCGGAACGaCGUAGCUc---- -3'
miRNA:   3'- -CGCGCG--CGUUUUGC-GCGUUGAuaacc -5'
21341 5' -49.2 NC_004778.3 + 119121 0.68 0.987677
Target:  5'- cGgGCGCGgGAAcgGCGCcCAauaagacGCUGUUGGu -3'
miRNA:   3'- -CgCGCGCgUUU--UGCGcGU-------UGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 86079 0.68 0.984361
Target:  5'- uCGCuGCGUcAGGCGUGCcGCUAaUGGu -3'
miRNA:   3'- cGCG-CGCGuUUUGCGCGuUGAUaACC- -5'
21341 5' -49.2 NC_004778.3 + 43898 0.69 0.983185
Target:  5'- cGCGCGCGguGGACacaugaugugucccgGCGCGGCg----- -3'
miRNA:   3'- -CGCGCGCguUUUG---------------CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 48880 0.69 0.980181
Target:  5'- cGUGCGUGCGAAcccguCGCcGCGGCUAc--- -3'
miRNA:   3'- -CGCGCGCGUUUu----GCG-CGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 40649 0.69 0.980181
Target:  5'- aGCGC-CGCAAGACGCa-AACUGUUc- -3'
miRNA:   3'- -CGCGcGCGUUUUGCGcgUUGAUAAcc -5'
21341 5' -49.2 NC_004778.3 + 6392 0.67 0.994792
Target:  5'- cCGCGCuGCAAAAgGCcgaauccaaGCAGCUGUUu- -3'
miRNA:   3'- cGCGCG-CGUUUUgCG---------CGUUGAUAAcc -5'
21341 5' -49.2 NC_004778.3 + 124444 0.67 0.995547
Target:  5'- gGCGcCGCGCuucagcauucuuGAAGCGCGCcgAGCUGc--- -3'
miRNA:   3'- -CGC-GCGCG------------UUUUGCGCG--UUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 90785 0.66 0.996209
Target:  5'- gGCGUGCGC-AAACGUGUuuAC-GUUGa -3'
miRNA:   3'- -CGCGCGCGuUUUGCGCGu-UGaUAACc -5'
21341 5' -49.2 NC_004778.3 + 75792 0.7 0.958965
Target:  5'- cGCaGCGUGCAAguugGACGCGCGAgUGc--- -3'
miRNA:   3'- -CG-CGCGCGUU----UUGCGCGUUgAUaacc -5'
21341 5' -49.2 NC_004778.3 + 26984 0.71 0.935014
Target:  5'- cGCGCGCGUAGGAgccaugucaaaaccCGCGCGGCc----- -3'
miRNA:   3'- -CGCGCGCGUUUU--------------GCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 127005 0.72 0.919978
Target:  5'- aCGUGCGCAAcuugcaGGCGCGCGAUUuugUGu -3'
miRNA:   3'- cGCGCGCGUU------UUGCGCGUUGAua-ACc -5'
21341 5' -49.2 NC_004778.3 + 54217 0.73 0.894166
Target:  5'- uUGCGuCGCuuguauguCGCGCAACUGUUGu -3'
miRNA:   3'- cGCGC-GCGuuuu----GCGCGUUGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 38504 0.73 0.864294
Target:  5'- aUGCGCGCuagcGCGCGCGACgaccGGu -3'
miRNA:   3'- cGCGCGCGuuu-UGCGCGUUGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 46563 0.66 0.99773
Target:  5'- uGUGCGaCGCGGcACGCGcCAAagagUGGc -3'
miRNA:   3'- -CGCGC-GCGUUuUGCGC-GUUgauaACC- -5'
21341 5' -49.2 NC_004778.3 + 118934 0.66 0.997648
Target:  5'- uGUGCGCGCcGGcCGCGCcGCgcccgaagcgUGGc -3'
miRNA:   3'- -CGCGCGCGuUUuGCGCGuUGaua-------ACC- -5'
21341 5' -49.2 NC_004778.3 + 38452 0.66 0.996789
Target:  5'- -gGCGCGCGGucGCGUGCGcGCUGg--- -3'
miRNA:   3'- cgCGCGCGUUu-UGCGCGU-UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 119261 0.66 0.996789
Target:  5'- cGCGCGuCGCGGucAACuuGCAACUGa--- -3'
miRNA:   3'- -CGCGC-GCGUU--UUGcgCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 101464 0.66 0.996209
Target:  5'- aUGCGCGuCAAggUGUGCGAUga--GGa -3'
miRNA:   3'- cGCGCGC-GUUuuGCGCGUUGauaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.