miRNA display CGI


Results 101 - 120 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 50371 0.69 0.982364
Target:  5'- gGCGCGUGguGAccgucGCGCGCcACUGc--- -3'
miRNA:   3'- -CGCGCGCguUU-----UGCGCGuUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 6392 0.67 0.994792
Target:  5'- cCGCGCuGCAAAAgGCcgaauccaaGCAGCUGUUu- -3'
miRNA:   3'- cGCGCG-CGUUUUgCG---------CGUUGAUAAcc -5'
21341 5' -49.2 NC_004778.3 + 114732 0.67 0.994792
Target:  5'- cCGUGUGCAAAACGgcuCGCAAUUGc--- -3'
miRNA:   3'- cGCGCGCGUUUUGC---GCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 24826 0.67 0.993937
Target:  5'- aGCGUGCgGCAAGuGCGCGUca-UAUUGa -3'
miRNA:   3'- -CGCGCG-CGUUU-UGCGCGuugAUAACc -5'
21341 5' -49.2 NC_004778.3 + 111905 0.68 0.99068
Target:  5'- cGCGCuGUGCGugauCGUGCAGuagAUUGGa -3'
miRNA:   3'- -CGCG-CGCGUuuu-GCGCGUUga-UAACC- -5'
21341 5' -49.2 NC_004778.3 + 128953 0.68 0.99068
Target:  5'- uGUGCGCGUcaccUGCGUuuUUAUUGGg -3'
miRNA:   3'- -CGCGCGCGuuuuGCGCGuuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 72512 0.68 0.989331
Target:  5'- uGCGCGCGUccAAGucgGCGCAcuugaccaaACUGUUGu -3'
miRNA:   3'- -CGCGCGCG--UUUug-CGCGU---------UGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 60407 0.68 0.987835
Target:  5'- aGCGgGCGUAGAGauggaacgccCGCGCAGCa----- -3'
miRNA:   3'- -CGCgCGCGUUUU----------GCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 124444 0.67 0.995547
Target:  5'- gGCGcCGCGCuucagcauucuuGAAGCGCGCcgAGCUGc--- -3'
miRNA:   3'- -CGC-GCGCG------------UUUUGCGCG--UUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 104476 0.69 0.977802
Target:  5'- cGCuGCGUGCAAcaccucGACGCGUAuu--UUGGg -3'
miRNA:   3'- -CG-CGCGCGUU------UUGCGCGUugauAACC- -5'
21341 5' -49.2 NC_004778.3 + 105149 0.69 0.980181
Target:  5'- gGCGC-CGCG--GCGCGC--UUGUUGGc -3'
miRNA:   3'- -CGCGcGCGUuuUGCGCGuuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 118782 0.69 0.977802
Target:  5'- gGCGCgGCGCGGccGGCGCGCAcaAUUAcgaGGc -3'
miRNA:   3'- -CGCG-CGCGUU--UUGCGCGU--UGAUaa-CC- -5'
21341 5' -49.2 NC_004778.3 + 6738 0.69 0.982364
Target:  5'- cCGCGCGCAAA-CGCGauuuGCgUGUUGc -3'
miRNA:   3'- cGCGCGCGUUUuGCGCgu--UG-AUAACc -5'
21341 5' -49.2 NC_004778.3 + 12639 0.69 0.982364
Target:  5'- cCGgGCG-AGAGCGCGCAACaAUaGGc -3'
miRNA:   3'- cGCgCGCgUUUUGCGCGUUGaUAaCC- -5'
21341 5' -49.2 NC_004778.3 + 33445 0.66 0.998106
Target:  5'- gGCG-GCGCGAAAaGCGCGGCc----- -3'
miRNA:   3'- -CGCgCGCGUUUUgCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 8815 0.72 0.913918
Target:  5'- gGCGCGCucaGCGAAugGCGCcuACUAa--- -3'
miRNA:   3'- -CGCGCG---CGUUUugCGCGu-UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 124084 0.72 0.913918
Target:  5'- -gGCGCGCugauGCGCGCggUUGgcGGc -3'
miRNA:   3'- cgCGCGCGuuu-UGCGCGuuGAUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 88962 0.74 0.830714
Target:  5'- aGCGCGUGC---GCGCGCAugucuacaaGCUuuUUGGg -3'
miRNA:   3'- -CGCGCGCGuuuUGCGCGU---------UGAu-AACC- -5'
21341 5' -49.2 NC_004778.3 + 109968 0.72 0.919978
Target:  5'- gGCGCGCcCAuuACGUGCGACgacaagcUGGu -3'
miRNA:   3'- -CGCGCGcGUuuUGCGCGUUGaua----ACC- -5'
21341 5' -49.2 NC_004778.3 + 118866 0.69 0.977802
Target:  5'- gGCGCGCGCA-----CGCAACUGa-GGa -3'
miRNA:   3'- -CGCGCGCGUuuugcGCGUUGAUaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.