miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 41491 0.66 0.997246
Target:  5'- aGCG-GUGCAAAAUGaCGcCGACUuugcauuGUUGGu -3'
miRNA:   3'- -CGCgCGCGUUUUGC-GC-GUUGA-------UAACC- -5'
21341 5' -49.2 NC_004778.3 + 38137 0.66 0.996789
Target:  5'- aCGUGUGCAugacugcuGACGCGCcGCUAc--- -3'
miRNA:   3'- cGCGCGCGUu-------UUGCGCGuUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 114803 0.66 0.996789
Target:  5'- cCGUGCGCAAA-CGCuucGCGGCUGc--- -3'
miRNA:   3'- cGCGCGCGUUUuGCG---CGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 124284 0.66 0.996789
Target:  5'- gGCGCGCuuCAAGAaugcugaaGCGCGGCgccggcgUGGg -3'
miRNA:   3'- -CGCGCGc-GUUUUg-------CGCGUUGaua----ACC- -5'
21341 5' -49.2 NC_004778.3 + 83621 0.66 0.996789
Target:  5'- aGCGguaCGCGgacaAAGACGuCGCAAUUGUUGu -3'
miRNA:   3'- -CGC---GCGCg---UUUUGC-GCGUUGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 38452 0.66 0.996789
Target:  5'- -gGCGCGCGGucGCGUGCGcGCUGg--- -3'
miRNA:   3'- cgCGCGCGUUu-UGCGCGU-UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 9674 0.66 0.996789
Target:  5'- -gGCGCGCAAAucgucgauacGCGCGCggUa----- -3'
miRNA:   3'- cgCGCGCGUUU----------UGCGCGuuGauaacc -5'
21341 5' -49.2 NC_004778.3 + 89629 0.66 0.996789
Target:  5'- gGCGUuuuCGCAuuGGCGCGUuuUUAUUGGc -3'
miRNA:   3'- -CGCGc--GCGUu-UUGCGCGuuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 119261 0.66 0.996789
Target:  5'- cGCGCGuCGCGGucAACuuGCAACUGa--- -3'
miRNA:   3'- -CGCGC-GCGUU--UUGcgCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 70332 0.66 0.996735
Target:  5'- uCGCGCGCAAAcuugcggggagucGCGCugucgaGCAAUg--UGGu -3'
miRNA:   3'- cGCGCGCGUUU-------------UGCG------CGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 2595 0.66 0.996451
Target:  5'- gGCGUGcCGCAcucgggccacagguAACGCGCAAUaaagUGGu -3'
miRNA:   3'- -CGCGC-GCGUu-------------UUGCGCGUUGaua-ACC- -5'
21341 5' -49.2 NC_004778.3 + 108420 0.66 0.996209
Target:  5'- cGCG-GCGCAGgugGACGCGCugguGCgccgcGGg -3'
miRNA:   3'- -CGCgCGCGUU---UUGCGCGu---UGauaa-CC- -5'
21341 5' -49.2 NC_004778.3 + 4607 0.66 0.996209
Target:  5'- cGCGUGC-CAGGcCGCGCGAUUcc-GGa -3'
miRNA:   3'- -CGCGCGcGUUUuGCGCGUUGAuaaCC- -5'
21341 5' -49.2 NC_004778.3 + 2137 0.66 0.996209
Target:  5'- uGCGC-CGCA--GCGUGCAcgaGCUGUg-- -3'
miRNA:   3'- -CGCGcGCGUuuUGCGCGU---UGAUAacc -5'
21341 5' -49.2 NC_004778.3 + 101464 0.66 0.996209
Target:  5'- aUGCGCGuCAAggUGUGCGAUga--GGa -3'
miRNA:   3'- cGCGCGC-GUUuuGCGCGUUGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 90785 0.66 0.996209
Target:  5'- gGCGUGCGC-AAACGUGUuuAC-GUUGa -3'
miRNA:   3'- -CGCGCGCGuUUUGCGCGu-UGaUAACc -5'
21341 5' -49.2 NC_004778.3 + 8488 0.66 0.996209
Target:  5'- gGCGCGUuccGCAa---GCGCGGCg--UGGu -3'
miRNA:   3'- -CGCGCG---CGUuuugCGCGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 10050 0.66 0.996209
Target:  5'- aGCGCGUGCGcAACaUGCAAaaGUUGa -3'
miRNA:   3'- -CGCGCGCGUuUUGcGCGUUgaUAACc -5'
21341 5' -49.2 NC_004778.3 + 95784 0.67 0.995547
Target:  5'- gGCaGCGCGCcGGcCGCGCuGCgccccgUGGa -3'
miRNA:   3'- -CG-CGCGCGuUUuGCGCGuUGaua---ACC- -5'
21341 5' -49.2 NC_004778.3 + 68573 0.67 0.995547
Target:  5'- uUGCGCGCAAGAUGUuguuuuGCAAauugaccaGUUGGu -3'
miRNA:   3'- cGCGCGCGUUUUGCG------CGUUga------UAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.