miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21342 3' -50.9 NC_004778.3 + 28231 0.66 0.987773
Target:  5'- -gUUAAACG-GGCAcaccuGCUGCGUgGCa -3'
miRNA:   3'- uaAGUUUGCaCCGUu----CGAUGCGgUGc -5'
21342 3' -50.9 NC_004778.3 + 43297 0.66 0.987773
Target:  5'- cGUUCAaaAACGU-GC-GGC-GCGCCGCGg -3'
miRNA:   3'- -UAAGU--UUGCAcCGuUCGaUGCGGUGC- -5'
21342 3' -50.9 NC_004778.3 + 100873 0.66 0.987773
Target:  5'- --gCGGAU-UGGCcAGCUugGCCGCc -3'
miRNA:   3'- uaaGUUUGcACCGuUCGAugCGGUGc -5'
21342 3' -50.9 NC_004778.3 + 95021 0.66 0.984265
Target:  5'- ----cGACG-GGCAGG-UGCGCCugGa -3'
miRNA:   3'- uaaguUUGCaCCGUUCgAUGCGGugC- -5'
21342 3' -50.9 NC_004778.3 + 118777 0.66 0.982248
Target:  5'- cUUCGGGCGcGGCGcGGCcgGCGCgCACa -3'
miRNA:   3'- uAAGUUUGCaCCGU-UCGa-UGCG-GUGc -5'
21342 3' -50.9 NC_004778.3 + 78541 0.66 0.982248
Target:  5'- --cCAGuuguUGUGGCAA-CUGCGCUACa -3'
miRNA:   3'- uaaGUUu---GCACCGUUcGAUGCGGUGc -5'
21342 3' -50.9 NC_004778.3 + 38137 0.66 0.977639
Target:  5'- -gUgAAGCGcaGGCccGCUGCGCCGCu -3'
miRNA:   3'- uaAgUUUGCa-CCGuuCGAUGCGGUGc -5'
21342 3' -50.9 NC_004778.3 + 15218 0.66 0.977639
Target:  5'- -cUCGGucACGUGGCgGAGC-GCGCCuACa -3'
miRNA:   3'- uaAGUU--UGCACCG-UUCGaUGCGG-UGc -5'
21342 3' -50.9 NC_004778.3 + 129291 0.67 0.972203
Target:  5'- --aCAAAUGcUGGC--GCUguACGCCGCGg -3'
miRNA:   3'- uaaGUUUGC-ACCGuuCGA--UGCGGUGC- -5'
21342 3' -50.9 NC_004778.3 + 1619 0.67 0.969154
Target:  5'- cUUCAAacacACGUuGCGcuuGCUGCGCUGCGg -3'
miRNA:   3'- uAAGUU----UGCAcCGUu--CGAUGCGGUGC- -5'
21342 3' -50.9 NC_004778.3 + 32642 0.67 0.966212
Target:  5'- uGUUCAAgcucGCGUGccacgaccgcugguGCAaaggcgacacgcagcGGCUGCGCCGCa -3'
miRNA:   3'- -UAAGUU----UGCAC--------------CGU---------------UCGAUGCGGUGc -5'
21342 3' -50.9 NC_004778.3 + 33627 0.67 0.965873
Target:  5'- --cCAuguCGUcGGCGAGC-ACGCCGCc -3'
miRNA:   3'- uaaGUuu-GCA-CCGUUCGaUGCGGUGc -5'
21342 3' -50.9 NC_004778.3 + 12999 0.67 0.965873
Target:  5'- uUUCAcGCG-GGCAGGUUugagGCGCUGCa -3'
miRNA:   3'- uAAGUuUGCaCCGUUCGA----UGCGGUGc -5'
21342 3' -50.9 NC_004778.3 + 60610 0.67 0.965532
Target:  5'- -cUC-AACGUgcuuauuaaaaaaGGCAAGCUGCGCagcagCACGa -3'
miRNA:   3'- uaAGuUUGCA-------------CCGUUCGAUGCG-----GUGC- -5'
21342 3' -50.9 NC_004778.3 + 27693 0.68 0.958591
Target:  5'- --aCGAGCGUGGCcAGU---GCCGCGu -3'
miRNA:   3'- uaaGUUUGCACCGuUCGaugCGGUGC- -5'
21342 3' -50.9 NC_004778.3 + 8899 0.68 0.950309
Target:  5'- ---uGGACG-GGguGGC-GCGCCACGg -3'
miRNA:   3'- uaagUUUGCaCCguUCGaUGCGGUGC- -5'
21342 3' -50.9 NC_004778.3 + 29324 0.68 0.94578
Target:  5'- cUUCGAAgGUGGCGcggcgcgcgcugGGgUGCGCCaaGCGg -3'
miRNA:   3'- uAAGUUUgCACCGU------------UCgAUGCGG--UGC- -5'
21342 3' -50.9 NC_004778.3 + 118909 0.68 0.945313
Target:  5'- ---gAAGCGUGGCAcguguugAGUgUGCGCCGCc -3'
miRNA:   3'- uaagUUUGCACCGU-------UCG-AUGCGGUGc -5'
21342 3' -50.9 NC_004778.3 + 32488 0.68 0.942937
Target:  5'- --gCGGuCGUGGCAcgcgagcuugaacauGGCUGCGUCAUGc -3'
miRNA:   3'- uaaGUUuGCACCGU---------------UCGAUGCGGUGC- -5'
21342 3' -50.9 NC_004778.3 + 95227 0.69 0.925015
Target:  5'- uGUUCAAccaaaucgccGCGgacucgGGCAuGgUGCGCCGCGg -3'
miRNA:   3'- -UAAGUU----------UGCa-----CCGUuCgAUGCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.