miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21342 3' -50.9 NC_004778.3 + 118909 0.68 0.945313
Target:  5'- ---gAAGCGUGGCAcguguugAGUgUGCGCCGCc -3'
miRNA:   3'- uaagUUUGCACCGU-------UCG-AUGCGGUGc -5'
21342 3' -50.9 NC_004778.3 + 57186 0.69 0.913025
Target:  5'- --aCAcGCGacauaGCGGGCUGCGCCACa -3'
miRNA:   3'- uaaGUuUGCac---CGUUCGAUGCGGUGc -5'
21342 3' -50.9 NC_004778.3 + 58418 0.7 0.893052
Target:  5'- cUUgAAGCGcGGCGAGCauucUGCGCaCACGa -3'
miRNA:   3'- uAAgUUUGCaCCGUUCG----AUGCG-GUGC- -5'
21342 3' -50.9 NC_004778.3 + 108517 0.71 0.854709
Target:  5'- --aCGAuGCGUGGCGuAGCU-UGCCACGu -3'
miRNA:   3'- uaaGUU-UGCACCGU-UCGAuGCGGUGC- -5'
21342 3' -50.9 NC_004778.3 + 60610 0.67 0.965532
Target:  5'- -cUC-AACGUgcuuauuaaaaaaGGCAAGCUGCGCagcagCACGa -3'
miRNA:   3'- uaAGuUUGCA-------------CCGUUCGAUGCG-----GUGC- -5'
21342 3' -50.9 NC_004778.3 + 33627 0.67 0.965873
Target:  5'- --cCAuguCGUcGGCGAGC-ACGCCGCc -3'
miRNA:   3'- uaaGUuu-GCA-CCGUUCGaUGCGGUGc -5'
21342 3' -50.9 NC_004778.3 + 32642 0.67 0.966212
Target:  5'- uGUUCAAgcucGCGUGccacgaccgcugguGCAaaggcgacacgcagcGGCUGCGCCGCa -3'
miRNA:   3'- -UAAGUU----UGCAC--------------CGU---------------UCGAUGCGGUGc -5'
21342 3' -50.9 NC_004778.3 + 15218 0.66 0.977639
Target:  5'- -cUCGGucACGUGGCgGAGC-GCGCCuACa -3'
miRNA:   3'- uaAGUU--UGCACCG-UUCGaUGCGG-UGc -5'
21342 3' -50.9 NC_004778.3 + 78541 0.66 0.982248
Target:  5'- --cCAGuuguUGUGGCAA-CUGCGCUACa -3'
miRNA:   3'- uaaGUUu---GCACCGUUcGAUGCGGUGc -5'
21342 3' -50.9 NC_004778.3 + 28231 0.66 0.987773
Target:  5'- -gUUAAACG-GGCAcaccuGCUGCGUgGCa -3'
miRNA:   3'- uaAGUUUGCaCCGUu----CGAUGCGgUGc -5'
21342 3' -50.9 NC_004778.3 + 43297 0.66 0.987773
Target:  5'- cGUUCAaaAACGU-GC-GGC-GCGCCGCGg -3'
miRNA:   3'- -UAAGU--UUGCAcCGuUCGaUGCGGUGC- -5'
21342 3' -50.9 NC_004778.3 + 100448 0.73 0.762232
Target:  5'- --aCAGGCGUGGCGGGCUAUG--ACGg -3'
miRNA:   3'- uaaGUUUGCACCGUUCGAUGCggUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.