miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21342 5' -52.3 NC_004778.3 + 118933 0.66 0.970134
Target:  5'- ------gUGCgCGCCGGCCGCGCc--- -3'
miRNA:   3'- guguuuuGCG-GCGGCUGGUGCGaaaa -5'
21342 5' -52.3 NC_004778.3 + 45227 0.66 0.970134
Target:  5'- -cCAGGACGCCGCUcg-CGCGCUg-- -3'
miRNA:   3'- guGUUUUGCGGCGGcugGUGCGAaaa -5'
21342 5' -52.3 NC_004778.3 + 69666 0.66 0.970134
Target:  5'- uCACAAAGucggaccccauCGCCGCUGAaaUgGCGCUUg- -3'
miRNA:   3'- -GUGUUUU-----------GCGGCGGCU--GgUGCGAAaa -5'
21342 5' -52.3 NC_004778.3 + 46969 0.66 0.970134
Target:  5'- aGCgAAAGCGCCggcgcucacGCCGA-CGCGCUUg- -3'
miRNA:   3'- gUG-UUUUGCGG---------CGGCUgGUGCGAAaa -5'
21342 5' -52.3 NC_004778.3 + 122295 0.66 0.970134
Target:  5'- aGCAAGGuCGgCGCUGACgCACGUUa-- -3'
miRNA:   3'- gUGUUUU-GCgGCGGCUG-GUGCGAaaa -5'
21342 5' -52.3 NC_004778.3 + 125708 0.66 0.970134
Target:  5'- cCGCA--ACGCCGaaGugCACGCc--- -3'
miRNA:   3'- -GUGUuuUGCGGCggCugGUGCGaaaa -5'
21342 5' -52.3 NC_004778.3 + 66638 0.66 0.970134
Target:  5'- aACGGAuCGgCGCCGACgCACGUc--- -3'
miRNA:   3'- gUGUUUuGCgGCGGCUG-GUGCGaaaa -5'
21342 5' -52.3 NC_004778.3 + 62472 0.66 0.966964
Target:  5'- --uGAAcCGaCCGCCucGACCACGCUg-- -3'
miRNA:   3'- gugUUUuGC-GGCGG--CUGGUGCGAaaa -5'
21342 5' -52.3 NC_004778.3 + 14536 0.66 0.966964
Target:  5'- uCACGucgUGCCGgaCGACCGCGCg--- -3'
miRNA:   3'- -GUGUuuuGCGGCg-GCUGGUGCGaaaa -5'
21342 5' -52.3 NC_004778.3 + 36523 0.66 0.966964
Target:  5'- aCGCA-GGCGCCGCUuugGACCaugACGCg--- -3'
miRNA:   3'- -GUGUuUUGCGGCGG---CUGG---UGCGaaaa -5'
21342 5' -52.3 NC_004778.3 + 45777 0.66 0.966964
Target:  5'- cCACAAacucAACGCCGCgacgagggcgCGGCUAUGCa--- -3'
miRNA:   3'- -GUGUU----UUGCGGCG----------GCUGGUGCGaaaa -5'
21342 5' -52.3 NC_004778.3 + 22554 0.66 0.966964
Target:  5'- uGCgAAAGCuCCGCCcACCACGUUUg- -3'
miRNA:   3'- gUG-UUUUGcGGCGGcUGGUGCGAAaa -5'
21342 5' -52.3 NC_004778.3 + 63718 0.66 0.963562
Target:  5'- aGCAAucacGCGCaCGUCGugCGCGCc--- -3'
miRNA:   3'- gUGUUu---UGCG-GCGGCugGUGCGaaaa -5'
21342 5' -52.3 NC_004778.3 + 122142 0.66 0.963562
Target:  5'- aACGu-GCGUcagCGCCGACCuuGCUUUUc -3'
miRNA:   3'- gUGUuuUGCG---GCGGCUGGugCGAAAA- -5'
21342 5' -52.3 NC_004778.3 + 88850 0.66 0.963562
Target:  5'- gCGCAc-GCGCCGCUuGCUGCGCg--- -3'
miRNA:   3'- -GUGUuuUGCGGCGGcUGGUGCGaaaa -5'
21342 5' -52.3 NC_004778.3 + 26717 0.66 0.963562
Target:  5'- gACAAcuAUGCgGCCGugcgcACCACGCUa-- -3'
miRNA:   3'- gUGUUu-UGCGgCGGC-----UGGUGCGAaaa -5'
21342 5' -52.3 NC_004778.3 + 10253 0.66 0.963209
Target:  5'- gCGCAGcGCGCCGauugcgcgcgggaCCGGCgGCGCa--- -3'
miRNA:   3'- -GUGUUuUGCGGC-------------GGCUGgUGCGaaaa -5'
21342 5' -52.3 NC_004778.3 + 45112 0.66 0.962496
Target:  5'- aCACGAAuuaGCGcCCGCuguggagagcgaccCGGCCGCGCg--- -3'
miRNA:   3'- -GUGUUU---UGC-GGCG--------------GCUGGUGCGaaaa -5'
21342 5' -52.3 NC_004778.3 + 118782 0.66 0.959924
Target:  5'- gGCGcgGCGCgGCCGG-CGCGCa--- -3'
miRNA:   3'- gUGUuuUGCGgCGGCUgGUGCGaaaa -5'
21342 5' -52.3 NC_004778.3 + 123055 0.66 0.959924
Target:  5'- uCACGuguuGGugG-CGCCGACCcCGCUUUc -3'
miRNA:   3'- -GUGU----UUugCgGCGGCUGGuGCGAAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.