miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21343 5' -48.9 NC_004778.3 + 61533 0.66 0.998073
Target:  5'- uCAAACU---GGCGCucagcgacgACGCGCcggCGCc -3'
miRNA:   3'- -GUUUGAuuuCCGCG---------UGCGCGaaaGCG- -5'
21343 5' -48.9 NC_004778.3 + 38514 0.66 0.998073
Target:  5'- gAAACUGGcaauGCGCGCuaGCGCg--CGCg -3'
miRNA:   3'- gUUUGAUUuc--CGCGUG--CGCGaaaGCG- -5'
21343 5' -48.9 NC_004778.3 + 29497 0.66 0.998073
Target:  5'- aCAGccGCUu--GGCGCACcccaGCGCg--CGCc -3'
miRNA:   3'- -GUU--UGAuuuCCGCGUG----CGCGaaaGCG- -5'
21343 5' -48.9 NC_004778.3 + 31248 0.66 0.998073
Target:  5'- -cAGCguuGAGGaGUGCGCGCUUUuugUGCa -3'
miRNA:   3'- guUUGau-UUCCgCGUGCGCGAAA---GCG- -5'
21343 5' -48.9 NC_004778.3 + 115087 0.66 0.998073
Target:  5'- aAGGCcgcGGuGCGCACGCcgGCUUgCGCu -3'
miRNA:   3'- gUUUGauuUC-CGCGUGCG--CGAAaGCG- -5'
21343 5' -48.9 NC_004778.3 + 26515 0.66 0.997963
Target:  5'- cCAAACUGgaugccGAGuuuuuuaggaaauuGCGCAguUGCGCUUUgCGCg -3'
miRNA:   3'- -GUUUGAU------UUC--------------CGCGU--GCGCGAAA-GCG- -5'
21343 5' -48.9 NC_004778.3 + 30916 0.66 0.997963
Target:  5'- --------cGGCGCacccacaaaaauugGCGCGCUUUgGCu -3'
miRNA:   3'- guuugauuuCCGCG--------------UGCGCGAAAgCG- -5'
21343 5' -48.9 NC_004778.3 + 99660 0.66 0.997848
Target:  5'- aAAGCaggGucGGCGCugGCGCaUguuuaaaaauagcacUCGCu -3'
miRNA:   3'- gUUUGa--UuuCCGCGugCGCGaA---------------AGCG- -5'
21343 5' -48.9 NC_004778.3 + 127409 0.66 0.997687
Target:  5'- gCAAACUcAGGGaGCGCugGauaGCg--CGCu -3'
miRNA:   3'- -GUUUGA-UUUC-CGCGugCg--CGaaaGCG- -5'
21343 5' -48.9 NC_004778.3 + 29327 0.66 0.997687
Target:  5'- -----cGAAGGUggcgcgGCGCGCGCUggggUGCg -3'
miRNA:   3'- guuugaUUUCCG------CGUGCGCGAaa--GCG- -5'
21343 5' -48.9 NC_004778.3 + 89887 0.66 0.997687
Target:  5'- -cAGCgugguGGGCGCAaGCgGCUUgcgCGCg -3'
miRNA:   3'- guUUGauu--UCCGCGUgCG-CGAAa--GCG- -5'
21343 5' -48.9 NC_004778.3 + 92957 0.66 0.997687
Target:  5'- gCAAAC----GGCGCugGCGCgcucCGUu -3'
miRNA:   3'- -GUUUGauuuCCGCGugCGCGaaa-GCG- -5'
21343 5' -48.9 NC_004778.3 + 86778 0.66 0.997687
Target:  5'- cCGAACUccGAAGcGCGCcgACGUGUug-CGCa -3'
miRNA:   3'- -GUUUGA--UUUC-CGCG--UGCGCGaaaGCG- -5'
21343 5' -48.9 NC_004778.3 + 126196 0.66 0.997687
Target:  5'- aAGGCU---GGUG-ACGCGUUUUUGCa -3'
miRNA:   3'- gUUUGAuuuCCGCgUGCGCGAAAGCG- -5'
21343 5' -48.9 NC_004778.3 + 47383 0.66 0.997687
Target:  5'- --uAUUuuGGGCGCgacgugucgcACGCGCg--CGCg -3'
miRNA:   3'- guuUGAuuUCCGCG----------UGCGCGaaaGCG- -5'
21343 5' -48.9 NC_004778.3 + 17630 0.66 0.997238
Target:  5'- uCGGuCUAAAGGCacaauggccagGCuGCGCGagaUUUCGCa -3'
miRNA:   3'- -GUUuGAUUUCCG-----------CG-UGCGCg--AAAGCG- -5'
21343 5' -48.9 NC_004778.3 + 95758 0.66 0.997238
Target:  5'- gGAGCcgcgccGGGCGCuaucCGCGCggcagCGCg -3'
miRNA:   3'- gUUUGauu---UCCGCGu---GCGCGaaa--GCG- -5'
21343 5' -48.9 NC_004778.3 + 110105 0.66 0.997238
Target:  5'- --------cGGCGUGCGCGCcgagCGCu -3'
miRNA:   3'- guuugauuuCCGCGUGCGCGaaa-GCG- -5'
21343 5' -48.9 NC_004778.3 + 94700 0.66 0.997238
Target:  5'- --cGCUGAAccgcGaGCGUGCGCGCUccUGCa -3'
miRNA:   3'- guuUGAUUU----C-CGCGUGCGCGAaaGCG- -5'
21343 5' -48.9 NC_004778.3 + 93113 0.66 0.99709
Target:  5'- gCAAGCUAAAuugcucgccgcgcuGGCGauCACGCaGUUgUCGCg -3'
miRNA:   3'- -GUUUGAUUU--------------CCGC--GUGCG-CGAaAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.