miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21344 3' -44.4 NC_004778.3 + 90020 0.66 0.999997
Target:  5'- uCCAAAACCGcGUCCacaGCC-GUGUc--- -3'
miRNA:   3'- -GGUUUUGGUuUAGG---CGGuCACAuuug -5'
21344 3' -44.4 NC_004778.3 + 117782 0.66 0.999996
Target:  5'- gCAuuGCCAAAa-CGCUAGUGUccaacAAGCg -3'
miRNA:   3'- gGUuuUGGUUUagGCGGUCACA-----UUUG- -5'
21344 3' -44.4 NC_004778.3 + 14553 0.66 0.999996
Target:  5'- aCCGcgcguCCAuGUgCGCCAGcauUGUGGACg -3'
miRNA:   3'- -GGUuuu--GGUuUAgGCGGUC---ACAUUUG- -5'
21344 3' -44.4 NC_004778.3 + 121925 0.66 0.999994
Target:  5'- uUguGAACC----CCGCCGGUGUAGu- -3'
miRNA:   3'- -GguUUUGGuuuaGGCGGUCACAUUug -5'
21344 3' -44.4 NC_004778.3 + 103638 0.66 0.999994
Target:  5'- uUCAAGACCAuacUCaCGCCgucgcGGUGUAGc- -3'
miRNA:   3'- -GGUUUUGGUuu-AG-GCGG-----UCACAUUug -5'
21344 3' -44.4 NC_004778.3 + 118281 0.66 0.999994
Target:  5'- uCUAGAACCGGcgCCGCCGccgauuuUGUcAAACu -3'
miRNA:   3'- -GGUUUUGGUUuaGGCGGUc------ACA-UUUG- -5'
21344 3' -44.4 NC_004778.3 + 72489 0.66 0.999992
Target:  5'- gCCAAGugCcg--CCGUCGGUGgcguUGAGCg -3'
miRNA:   3'- -GGUUUugGuuuaGGCGGUCAC----AUUUG- -5'
21344 3' -44.4 NC_004778.3 + 45324 0.66 0.999992
Target:  5'- uCCGcuguGugCGcucgCCGCCGGUGUuGACa -3'
miRNA:   3'- -GGUu---UugGUuua-GGCGGUCACAuUUG- -5'
21344 3' -44.4 NC_004778.3 + 121463 0.66 0.999992
Target:  5'- aCAuaguAACUg---CCGCCAGUGUuguuGAGCg -3'
miRNA:   3'- gGUu---UUGGuuuaGGCGGUCACA----UUUG- -5'
21344 3' -44.4 NC_004778.3 + 111402 0.67 0.999988
Target:  5'- aUCAAAGCCAGuUCCGUg---GUGGGCa -3'
miRNA:   3'- -GGUUUUGGUUuAGGCGgucaCAUUUG- -5'
21344 3' -44.4 NC_004778.3 + 6831 0.67 0.999988
Target:  5'- aCCAcGACgGGcgCCcCCuGUGUGGACg -3'
miRNA:   3'- -GGUuUUGgUUuaGGcGGuCACAUUUG- -5'
21344 3' -44.4 NC_004778.3 + 95524 0.67 0.999984
Target:  5'- aCCAcguCCGcGUCCGCCAGcucguUGUGGu- -3'
miRNA:   3'- -GGUuuuGGUuUAGGCGGUC-----ACAUUug -5'
21344 3' -44.4 NC_004778.3 + 60523 0.67 0.999984
Target:  5'- aUCAAGACCAAA-CCGCUGGagcuGGCg -3'
miRNA:   3'- -GGUUUUGGUUUaGGCGGUCacauUUG- -5'
21344 3' -44.4 NC_004778.3 + 55426 0.67 0.999977
Target:  5'- gCUuuGGCC-AGUCCGUCGGU-UAAACa -3'
miRNA:   3'- -GGuuUUGGuUUAGGCGGUCAcAUUUG- -5'
21344 3' -44.4 NC_004778.3 + 90814 0.68 0.999957
Target:  5'- gCCAGuACCAGcUCgGCCGGgcacUGAGCa -3'
miRNA:   3'- -GGUUuUGGUUuAGgCGGUCac--AUUUG- -5'
21344 3' -44.4 NC_004778.3 + 121716 0.68 0.999922
Target:  5'- gCAGGgcGCCAAAaCgGCCGGcGUGGGCg -3'
miRNA:   3'- gGUUU--UGGUUUaGgCGGUCaCAUUUG- -5'
21344 3' -44.4 NC_004778.3 + 116748 0.68 0.999896
Target:  5'- gCCAAAGCUcg--CCGCCGGUcGgcuGACu -3'
miRNA:   3'- -GGUUUUGGuuuaGGCGGUCA-Cau-UUG- -5'
21344 3' -44.4 NC_004778.3 + 2023 0.68 0.999896
Target:  5'- gCCAgcacucGAGCUuGAUCUGCgauaaGGUGUAAGCa -3'
miRNA:   3'- -GGU------UUUGGuUUAGGCGg----UCACAUUUG- -5'
21344 3' -44.4 NC_004778.3 + 86768 0.69 0.999821
Target:  5'- aCCAAGuUCGggcGAUuuGCCAGUGUAc-- -3'
miRNA:   3'- -GGUUUuGGU---UUAggCGGUCACAUuug -5'
21344 3' -44.4 NC_004778.3 + 106350 0.69 0.999768
Target:  5'- gCAAAGCCAAcaCCGCCGcgccGUAGAUg -3'
miRNA:   3'- gGUUUUGGUUuaGGCGGUca--CAUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.