miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21344 5' -52.6 NC_004778.3 + 5049 0.66 0.962222
Target:  5'- gGAUGU-CGCCGCGcGACUGGCggcgUGg -3'
miRNA:   3'- gUUACGgGUGGUGCcUUGACCGaa--AC- -5'
21344 5' -52.6 NC_004778.3 + 39255 0.67 0.941153
Target:  5'- gCAGUGUUCACCACGGucagaagGGCg--- -3'
miRNA:   3'- -GUUACGGGUGGUGCCuuga---CCGaaac -5'
21344 5' -52.6 NC_004778.3 + 118275 0.67 0.930942
Target:  5'- --uUGCCC-CCGCGGcuauuUUGGCUUg- -3'
miRNA:   3'- guuACGGGuGGUGCCuu---GACCGAAac -5'
21344 5' -52.6 NC_004778.3 + 39190 0.67 0.930942
Target:  5'- ---cGCCCGCUACGGucauGCaGGCg--- -3'
miRNA:   3'- guuaCGGGUGGUGCCu---UGaCCGaaac -5'
21344 5' -52.6 NC_004778.3 + 89299 0.67 0.925445
Target:  5'- cUAGUGCCgAUCACGGAGaucGGCg--- -3'
miRNA:   3'- -GUUACGGgUGGUGCCUUga-CCGaaac -5'
21344 5' -52.6 NC_004778.3 + 94727 0.68 0.919687
Target:  5'- gCAAU-CCCAgCACGGGcguCUGGCUg-- -3'
miRNA:   3'- -GUUAcGGGUgGUGCCUu--GACCGAaac -5'
21344 5' -52.6 NC_004778.3 + 21187 0.68 0.913669
Target:  5'- aAGUGCUCGCCgGCGGAcgugcagccguuGCUGGUg--- -3'
miRNA:   3'- gUUACGGGUGG-UGCCU------------UGACCGaaac -5'
21344 5' -52.6 NC_004778.3 + 48073 0.68 0.907392
Target:  5'- --cUGUCCACCAUGucgguGAACUGGCc--- -3'
miRNA:   3'- guuACGGGUGGUGC-----CUUGACCGaaac -5'
21344 5' -52.6 NC_004778.3 + 109093 0.69 0.879748
Target:  5'- aCAAUGUCCAgCACGGGGguUUGGUUa-- -3'
miRNA:   3'- -GUUACGGGUgGUGCCUU--GACCGAaac -5'
21344 5' -52.6 NC_004778.3 + 126011 0.69 0.879748
Target:  5'- gAAUGCCCACUGCGucacaaaauuGCUGGCa--- -3'
miRNA:   3'- gUUACGGGUGGUGCcu--------UGACCGaaac -5'
21344 5' -52.6 NC_004778.3 + 60052 0.69 0.872223
Target:  5'- ---aGCCCGCCGaGGAACcGGCg--- -3'
miRNA:   3'- guuaCGGGUGGUgCCUUGaCCGaaac -5'
21344 5' -52.6 NC_004778.3 + 33740 0.69 0.864464
Target:  5'- ---aGCCCGCgaaaGCGGAuuGCUGGCg--- -3'
miRNA:   3'- guuaCGGGUGg---UGCCU--UGACCGaaac -5'
21344 5' -52.6 NC_004778.3 + 95355 0.7 0.831213
Target:  5'- gCGcgGCCCgACCACaacGAGCUGGCg--- -3'
miRNA:   3'- -GUuaCGGG-UGGUGc--CUUGACCGaaac -5'
21344 5' -52.6 NC_004778.3 + 90969 0.7 0.822385
Target:  5'- uCAGUGCCCgGCCGagcUGGuAGCUGGCg--- -3'
miRNA:   3'- -GUUACGGG-UGGU---GCC-UUGACCGaaac -5'
21344 5' -52.6 NC_004778.3 + 73332 0.7 0.813369
Target:  5'- uCGAUGUCguCCAUGGAcAUUGGCUUUu -3'
miRNA:   3'- -GUUACGGguGGUGCCU-UGACCGAAAc -5'
21344 5' -52.6 NC_004778.3 + 98833 0.73 0.662212
Target:  5'- -cAUGCCCaauGCCACGGAGCgcGGCa--- -3'
miRNA:   3'- guUACGGG---UGGUGCCUUGa-CCGaaac -5'
21344 5' -52.6 NC_004778.3 + 111245 1.09 0.004199
Target:  5'- aCAAUGCCCACCACGGAACUGGCUUUGa -3'
miRNA:   3'- -GUUACGGGUGGUGCCUUGACCGAAAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.