miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21345 3' -56.8 NC_004778.3 + 113554 0.66 0.845234
Target:  5'- -uUGCGguAGC-GCAUCAGCCgGaCGu -3'
miRNA:   3'- acAUGCguUCGaCGUAGUCGGgCgGC- -5'
21345 3' -56.8 NC_004778.3 + 128769 0.66 0.845234
Target:  5'- cGgagGCGgAGGCggagGCGgagguauGCCCGCCGa -3'
miRNA:   3'- aCa--UGCgUUCGa---CGUagu----CGGGCGGC- -5'
21345 3' -56.8 NC_004778.3 + 128688 0.66 0.845234
Target:  5'- cGgagGCGgAGGCggagGCGgagguauGCCCGCCGa -3'
miRNA:   3'- aCa--UGCgUUCGa---CGUagu----CGGGCGGC- -5'
21345 3' -56.8 NC_004778.3 + 33973 0.66 0.836973
Target:  5'- --cGCGCAGGCUGCcgCGuGCaCGuCCGu -3'
miRNA:   3'- acaUGCGUUCGACGuaGU-CGgGC-GGC- -5'
21345 3' -56.8 NC_004778.3 + 37762 0.66 0.836973
Target:  5'- aUGUugGCAAuuuGC-GCGUCGGCCCuuguUCGg -3'
miRNA:   3'- -ACAugCGUU---CGaCGUAGUCGGGc---GGC- -5'
21345 3' -56.8 NC_004778.3 + 61664 0.66 0.836973
Target:  5'- --cGCGCAuGCUGgGcCAGCC-GCCGa -3'
miRNA:   3'- acaUGCGUuCGACgUaGUCGGgCGGC- -5'
21345 3' -56.8 NC_004778.3 + 5255 0.66 0.834458
Target:  5'- --aGCGCGAGCUGCAcguUCGcGCacagaccgguuuugUCGCCGc -3'
miRNA:   3'- acaUGCGUUCGACGU---AGU-CG--------------GGCGGC- -5'
21345 3' -56.8 NC_004778.3 + 120976 0.66 0.828521
Target:  5'- --cGCGCccGCUGCccCGGCgCCGCCu -3'
miRNA:   3'- acaUGCGuuCGACGuaGUCG-GGCGGc -5'
21345 3' -56.8 NC_004778.3 + 32832 0.66 0.828521
Target:  5'- cGUagACGCGcAGCUGCcgCGGCgCGUgGu -3'
miRNA:   3'- aCA--UGCGU-UCGACGuaGUCGgGCGgC- -5'
21345 3' -56.8 NC_004778.3 + 21088 0.66 0.828521
Target:  5'- --gGCGUcAGC-GCGgugCAGCCCGCgGa -3'
miRNA:   3'- acaUGCGuUCGaCGUa--GUCGGGCGgC- -5'
21345 3' -56.8 NC_004778.3 + 125998 0.66 0.819884
Target:  5'- --cGCGCAugacGCUGCGUgGGagucguCCUGCCGg -3'
miRNA:   3'- acaUGCGUu---CGACGUAgUC------GGGCGGC- -5'
21345 3' -56.8 NC_004778.3 + 4208 0.66 0.819884
Target:  5'- --cAgGCAGGC-GC-UCGGCCUGCCc -3'
miRNA:   3'- acaUgCGUUCGaCGuAGUCGGGCGGc -5'
21345 3' -56.8 NC_004778.3 + 57019 0.66 0.811071
Target:  5'- cGUGCGCGAGC-GCGUUuuauuuGCgCGuCCGu -3'
miRNA:   3'- aCAUGCGUUCGaCGUAGu-----CGgGC-GGC- -5'
21345 3' -56.8 NC_004778.3 + 56562 0.66 0.811071
Target:  5'- --aACGCGAGCacguaaacgauUGCggCAGCgacCCGCCGc -3'
miRNA:   3'- acaUGCGUUCG-----------ACGuaGUCG---GGCGGC- -5'
21345 3' -56.8 NC_004778.3 + 110108 0.66 0.811071
Target:  5'- cGUGCGCGccgAGCgcuuggGCAcCGGCCgGuCCGu -3'
miRNA:   3'- aCAUGCGU---UCGa-----CGUaGUCGGgC-GGC- -5'
21345 3' -56.8 NC_004778.3 + 29351 0.66 0.811071
Target:  5'- gGUGCGCcaagcGGCUGUAcacgcaacgCGGUuuGCCGg -3'
miRNA:   3'- aCAUGCGu----UCGACGUa--------GUCGggCGGC- -5'
21345 3' -56.8 NC_004778.3 + 986 0.66 0.811071
Target:  5'- --gGCGCAgcagcGGCUccaacGCGUggCGGUCCGCCGa -3'
miRNA:   3'- acaUGCGU-----UCGA-----CGUA--GUCGGGCGGC- -5'
21345 3' -56.8 NC_004778.3 + 39170 0.66 0.811071
Target:  5'- gGUGCGCAcGaccaccGCGUC-GCCCGCUa -3'
miRNA:   3'- aCAUGCGUuCga----CGUAGuCGGGCGGc -5'
21345 3' -56.8 NC_004778.3 + 34581 0.66 0.808394
Target:  5'- gUGUACaGCAGuacgggcacgccgcGCUGCcggagCAGCCCgGCCa -3'
miRNA:   3'- -ACAUG-CGUU--------------CGACGua---GUCGGG-CGGc -5'
21345 3' -56.8 NC_004778.3 + 43589 0.66 0.80209
Target:  5'- uUGU-CGCAAcgcucguggucGCUGuCGUCGcuGUCCGCCGg -3'
miRNA:   3'- -ACAuGCGUU-----------CGAC-GUAGU--CGGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.