miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21346 3' -57.3 NC_004778.3 + 35782 0.68 0.745047
Target:  5'- gGUUGGcGGUCUGCgaAUGGUGUGUGUUu -3'
miRNA:   3'- gCAACC-UUAGACGg-UGCCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 35998 0.69 0.695733
Target:  5'- uCGUUGGGAUg-GCaccgCACGGCGgGCaacGCCa -3'
miRNA:   3'- -GCAACCUUAgaCG----GUGCCGCgCG---CGG- -5'
21346 3' -57.3 NC_004778.3 + 36506 0.66 0.843349
Target:  5'- aCGUUGGAGUgCagcgUGCCGuuGCGCGacaugaCGCCc -3'
miRNA:   3'- -GCAACCUUA-G----ACGGUgcCGCGC------GCGG- -5'
21346 3' -57.3 NC_004778.3 + 37789 0.68 0.735344
Target:  5'- --gUGGugccgGUCACGGCGC-CGCCg -3'
miRNA:   3'- gcaACCuuagaCGGUGCCGCGcGCGG- -5'
21346 3' -57.3 NC_004778.3 + 41840 0.67 0.782788
Target:  5'- gCGUUGGAGaacugGCuCGCGGCGCaaccCGUCg -3'
miRNA:   3'- -GCAACCUUaga--CG-GUGCCGCGc---GCGG- -5'
21346 3' -57.3 NC_004778.3 + 43893 0.67 0.76415
Target:  5'- gCGgUGGAcacaugAUgUGUCcCGGCGCgGCGCCc -3'
miRNA:   3'- -GCaACCU------UAgACGGuGCCGCG-CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 44919 0.66 0.826884
Target:  5'- aGUUGacuauaaacGGcgCUGCUguACcGCGCGCGCCc -3'
miRNA:   3'- gCAAC---------CUuaGACGG--UGcCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 45458 0.67 0.76415
Target:  5'- aGgcGGAAcucgCUGCCGCGGUcgggcaacucGCGCGgaCCg -3'
miRNA:   3'- gCaaCCUUa---GACGGUGCCG----------CGCGC--GG- -5'
21346 3' -57.3 NC_004778.3 + 46401 0.72 0.504804
Target:  5'- -------cUCUGCCACucuuuGGCGCGUGCCg -3'
miRNA:   3'- gcaaccuuAGACGGUG-----CCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 47566 0.69 0.645094
Target:  5'- uGUUGGggUggcgCgugGuCCACGcGCGCGCGUg -3'
miRNA:   3'- gCAACCuuA----Ga--C-GGUGC-CGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 53668 0.71 0.553916
Target:  5'- uCGUUGaGGcgCUGCCcaauGCGGCGCaaaacaaCGCCg -3'
miRNA:   3'- -GCAAC-CUuaGACGG----UGCCGCGc------GCGG- -5'
21346 3' -57.3 NC_004778.3 + 55273 0.66 0.826884
Target:  5'- --cUGGAAguguacgaGUCGCuGGCGCGCGCa -3'
miRNA:   3'- gcaACCUUaga-----CGGUG-CCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 55449 0.71 0.543964
Target:  5'- ---cGGuccuUCUucgGCCGCuGCGCGCGCCa -3'
miRNA:   3'- gcaaCCuu--AGA---CGGUGcCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 57927 0.67 0.76415
Target:  5'- uGUcGGAAUacguguggcgcUUGgCGCGGCGgGCGUCg -3'
miRNA:   3'- gCAaCCUUA-----------GACgGUGCCGCgCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 59755 0.66 0.835208
Target:  5'- ---cGGuuuUCgGCCAagUGGCGCGCGUa -3'
miRNA:   3'- gcaaCCuu-AGaCGGU--GCCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 59998 0.66 0.8513
Target:  5'- ---cGGAGUCgGCCGCGGaCGaCcUGCCc -3'
miRNA:   3'- gcaaCCUUAGaCGGUGCC-GC-GcGCGG- -5'
21346 3' -57.3 NC_004778.3 + 61627 0.67 0.800889
Target:  5'- gCGuUUGGc----GCCGCGcagccaGCGCGCGCCa -3'
miRNA:   3'- -GC-AACCuuagaCGGUGC------CGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 61973 0.68 0.725552
Target:  5'- uGUcgGGGcgCuUGCCGCuGCGCGUgGCCa -3'
miRNA:   3'- gCAa-CCUuaG-ACGGUGcCGCGCG-CGG- -5'
21346 3' -57.3 NC_004778.3 + 63504 0.71 0.573972
Target:  5'- ---cGGGcUCaUGCUGCGGCG-GCGCCa -3'
miRNA:   3'- gcaaCCUuAG-ACGGUGCCGCgCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 67230 0.7 0.61452
Target:  5'- -uUUGGAGUCgcuccauCCGauGCGCGUGCCg -3'
miRNA:   3'- gcAACCUUAGac-----GGUgcCGCGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.