miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21346 3' -57.3 NC_004778.3 + 70137 0.68 0.705738
Target:  5'- aGUUGcagguUUUGCgGCgGGCGCGCGCa -3'
miRNA:   3'- gCAACcuu--AGACGgUG-CCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 73431 0.66 0.834384
Target:  5'- uCGUUGGAA---GCgCugGGCGCGUugggcgaucgcacGCCc -3'
miRNA:   3'- -GCAACCUUagaCG-GugCCGCGCG-------------CGG- -5'
21346 3' -57.3 NC_004778.3 + 83270 0.69 0.675575
Target:  5'- aCGUUGGGuaaccaGUCgaUCGCGGCGCGCaaGCUg -3'
miRNA:   3'- -GCAACCU------UAGacGGUGCCGCGCG--CGG- -5'
21346 3' -57.3 NC_004778.3 + 85444 0.66 0.819242
Target:  5'- aCGcgGGcGUUUGCgGCGGCGacggcauggacgcggGCGCCg -3'
miRNA:   3'- -GCaaCCuUAGACGgUGCCGCg--------------CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 87713 0.69 0.645094
Target:  5'- uCGUUGuAAUgCUGUagCAUGGCGCGCGgCg -3'
miRNA:   3'- -GCAACcUUA-GACG--GUGCCGCGCGCgG- -5'
21346 3' -57.3 NC_004778.3 + 88689 0.67 0.791909
Target:  5'- ---cGGGAUgUcGCCgcgcagcaaGCGGCGCGUGCg -3'
miRNA:   3'- gcaaCCUUAgA-CGG---------UGCCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 90457 0.69 0.665438
Target:  5'- --cUGGc--UUGCUACGGCGC-CGCCg -3'
miRNA:   3'- gcaACCuuaGACGGUGCCGCGcGCGG- -5'
21346 3' -57.3 NC_004778.3 + 93054 0.66 0.846553
Target:  5'- --gUGGAGuccggaauuugcgcuUCUGCCAaGGCGUuggucGCGCUg -3'
miRNA:   3'- gcaACCUU---------------AGACGGUgCCGCG-----CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 93166 0.67 0.800889
Target:  5'- gCGUUGGGG-CUGCUGCGcguucaCGCG-GCCg -3'
miRNA:   3'- -GCAACCUUaGACGGUGCc-----GCGCgCGG- -5'
21346 3' -57.3 NC_004778.3 + 95178 0.69 0.644075
Target:  5'- ---cGGggUgguccaggcgcacCUGCCcgucggcgcACGGCGCGCGCg -3'
miRNA:   3'- gcaaCCuuA-------------GACGG---------UGCCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 95755 0.68 0.753696
Target:  5'- -uUUGGAGcCgcGCCgggcgcuauccgcGCGGCaGCGCGCCg -3'
miRNA:   3'- gcAACCUUaGa-CGG-------------UGCCG-CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 97366 0.68 0.709723
Target:  5'- uGUUGGGcaucgcguAUUUGCUgaccgccaucgugugGCGGCGCGCaaggaaGCCg -3'
miRNA:   3'- gCAACCU--------UAGACGG---------------UGCCGCGCG------CGG- -5'
21346 3' -57.3 NC_004778.3 + 104349 0.67 0.783706
Target:  5'- aCGUUGGccg--GCguacgugacucgguCGGCGCGCGCCu -3'
miRNA:   3'- -GCAACCuuagaCGgu------------GCCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 105145 0.66 0.843349
Target:  5'- -aUUGGGc---GCCGCGGCGCGCu-- -3'
miRNA:   3'- gcAACCUuagaCGGUGCCGCGCGcgg -5'
21346 3' -57.3 NC_004778.3 + 108891 0.67 0.809716
Target:  5'- aCGUaGGAAgguggUGCCGCGaCGCaGCGCUg -3'
miRNA:   3'- -GCAaCCUUag---ACGGUGCcGCG-CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 109995 0.66 0.835208
Target:  5'- --cUGGuGUCgguggUGaCCACGGUguuucgGCGCGCCg -3'
miRNA:   3'- gcaACCuUAG-----AC-GGUGCCG------CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 111793 0.95 0.018974
Target:  5'- gCGUUGGAAUCUGCCACgGGC-CGCGCCg -3'
miRNA:   3'- -GCAACCUUAGACGGUG-CCGcGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 115093 0.69 0.645094
Target:  5'- --aUGGcaaagGCCGCGGUGCGCacGCCg -3'
miRNA:   3'- gcaACCuuagaCGGUGCCGCGCG--CGG- -5'
21346 3' -57.3 NC_004778.3 + 118854 0.68 0.735344
Target:  5'- ---cGGAA-CaGaCACGGCGCGCGCa -3'
miRNA:   3'- gcaaCCUUaGaCgGUGCCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 121248 0.72 0.485681
Target:  5'- aGUcGGggUCUGCgGCGGgGuCGCucuGCCg -3'
miRNA:   3'- gCAaCCuuAGACGgUGCCgC-GCG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.