Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21346 | 3' | -57.3 | NC_004778.3 | + | 47566 | 0.69 | 0.645094 |
Target: 5'- uGUUGGggUggcgCgugGuCCACGcGCGCGCGUg -3' miRNA: 3'- gCAACCuuA----Ga--C-GGUGC-CGCGCGCGg -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 95178 | 0.69 | 0.644075 |
Target: 5'- ---cGGggUgguccaggcgcacCUGCCcgucggcgcACGGCGCGCGCg -3' miRNA: 3'- gcaaCCuuA-------------GACGG---------UGCCGCGCGCGg -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 8910 | 0.7 | 0.631844 |
Target: 5'- uGUUGGggUaguggacgggguggCgcGCCACGGCGCcggcgGCGUCa -3' miRNA: 3'- gCAACCuuA--------------Ga-CGGUGCCGCG-----CGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 67230 | 0.7 | 0.61452 |
Target: 5'- -uUUGGAGUCgcuccauCCGauGCGCGUGCCg -3' miRNA: 3'- gcAACCUUAGac-----GGUgcCGCGCGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 55449 | 0.71 | 0.543964 |
Target: 5'- ---cGGuccuUCUucgGCCGCuGCGCGCGCCa -3' miRNA: 3'- gcaaCCuu--AGA---CGGUGcCGCGCGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 17268 | 0.74 | 0.395881 |
Target: 5'- ---cGGcg-UUGCCACGGUagGCGCGCCg -3' miRNA: 3'- gcaaCCuuaGACGGUGCCG--CGCGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 32305 | 0.78 | 0.228308 |
Target: 5'- -uUUGGAAgugGCCGCGGCGCauuggaGCGCCg -3' miRNA: 3'- gcAACCUUagaCGGUGCCGCG------CGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 37789 | 0.68 | 0.735344 |
Target: 5'- --gUGGugccgGUCACGGCGC-CGCCg -3' miRNA: 3'- gcaACCuuagaCGGUGCCGCGcGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 1136 | 0.68 | 0.745047 |
Target: 5'- gCGUUGGAGgccgCUGCUGCGcCGauCGaCGCCg -3' miRNA: 3'- -GCAACCUUa---GACGGUGCcGC--GC-GCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 31905 | 0.66 | 0.843349 |
Target: 5'- cCGUUGGA----GCU--GGCGaCGCGCCg -3' miRNA: 3'- -GCAACCUuagaCGGugCCGC-GCGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 36506 | 0.66 | 0.843349 |
Target: 5'- aCGUUGGAGUgCagcgUGCCGuuGCGCGacaugaCGCCc -3' miRNA: 3'- -GCAACCUUA-G----ACGGUgcCGCGC------GCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 59755 | 0.66 | 0.835208 |
Target: 5'- ---cGGuuuUCgGCCAagUGGCGCGCGUa -3' miRNA: 3'- gcaaCCuu-AGaCGGU--GCCGCGCGCGg -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 73431 | 0.66 | 0.834384 |
Target: 5'- uCGUUGGAA---GCgCugGGCGCGUugggcgaucgcacGCCc -3' miRNA: 3'- -GCAACCUUagaCG-GugCCGCGCG-------------CGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 85444 | 0.66 | 0.819242 |
Target: 5'- aCGcgGGcGUUUGCgGCGGCGacggcauggacgcggGCGCCg -3' miRNA: 3'- -GCaaCCuUAGACGgUGCCGCg--------------CGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 108891 | 0.67 | 0.809716 |
Target: 5'- aCGUaGGAAgguggUGCCGCGaCGCaGCGCUg -3' miRNA: 3'- -GCAaCCUUag---ACGGUGCcGCG-CGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 18549 | 0.67 | 0.809716 |
Target: 5'- aCGUUGGG---UGCCACGGaGUucCGCCg -3' miRNA: 3'- -GCAACCUuagACGGUGCCgCGc-GCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 93166 | 0.67 | 0.800889 |
Target: 5'- gCGUUGGGG-CUGCUGCGcguucaCGCG-GCCg -3' miRNA: 3'- -GCAACCUUaGACGGUGCc-----GCGCgCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 43893 | 0.67 | 0.76415 |
Target: 5'- gCGgUGGAcacaugAUgUGUCcCGGCGCgGCGCCc -3' miRNA: 3'- -GCaACCU------UAgACGGuGCCGCG-CGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 57927 | 0.67 | 0.76415 |
Target: 5'- uGUcGGAAUacguguggcgcUUGgCGCGGCGgGCGUCg -3' miRNA: 3'- gCAaCCUUA-----------GACgGUGCCGCgCGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 32820 | 0.68 | 0.754652 |
Target: 5'- --------gCUGCCGCGGCGCGUGgUg -3' miRNA: 3'- gcaaccuuaGACGGUGCCGCGCGCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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