miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21346 3' -57.3 NC_004778.3 + 43893 0.67 0.76415
Target:  5'- gCGgUGGAcacaugAUgUGUCcCGGCGCgGCGCCc -3'
miRNA:   3'- -GCaACCU------UAgACGGuGCCGCG-CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 55449 0.71 0.543964
Target:  5'- ---cGGuccuUCUucgGCCGCuGCGCGCGCCa -3'
miRNA:   3'- gcaaCCuu--AGA---CGGUGcCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 47566 0.69 0.645094
Target:  5'- uGUUGGggUggcgCgugGuCCACGcGCGCGCGUg -3'
miRNA:   3'- gCAACCuuA----Ga--C-GGUGC-CGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 93166 0.67 0.800889
Target:  5'- gCGUUGGGG-CUGCUGCGcguucaCGCG-GCCg -3'
miRNA:   3'- -GCAACCUUaGACGGUGCc-----GCGCgCGG- -5'
21346 3' -57.3 NC_004778.3 + 4734 0.79 0.217449
Target:  5'- cCGUUGGAcaguggccaGUCUGCUaacGCGGCacaGCGCGCUg -3'
miRNA:   3'- -GCAACCU---------UAGACGG---UGCCG---CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 18549 0.67 0.809716
Target:  5'- aCGUUGGG---UGCCACGGaGUucCGCCg -3'
miRNA:   3'- -GCAACCUuagACGGUGCCgCGc-GCGG- -5'
21346 3' -57.3 NC_004778.3 + 108891 0.67 0.809716
Target:  5'- aCGUaGGAAgguggUGCCGCGaCGCaGCGCUg -3'
miRNA:   3'- -GCAaCCUUag---ACGGUGCcGCG-CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 7143 0.7 0.61452
Target:  5'- ---aGGAAUCcGUCuCGGCgggcgGCGCGCCg -3'
miRNA:   3'- gcaaCCUUAGaCGGuGCCG-----CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 44919 0.66 0.826884
Target:  5'- aGUUGacuauaaacGGcgCUGCUguACcGCGCGCGCCc -3'
miRNA:   3'- gCAAC---------CUuaGACGG--UGcCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 1663 0.66 0.826884
Target:  5'- uCGUUGGcaccuUCgGUUugGGUGCG-GCCa -3'
miRNA:   3'- -GCAACCuu---AGaCGGugCCGCGCgCGG- -5'
21346 3' -57.3 NC_004778.3 + 118854 0.68 0.735344
Target:  5'- ---cGGAA-CaGaCACGGCGCGCGCa -3'
miRNA:   3'- gcaaCCUUaGaCgGUGCCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 61973 0.68 0.725552
Target:  5'- uGUcgGGGcgCuUGCCGCuGCGCGUgGCCa -3'
miRNA:   3'- gCAa-CCUuaG-ACGGUGcCGCGCG-CGG- -5'
21346 3' -57.3 NC_004778.3 + 121606 0.68 0.71568
Target:  5'- ---cGGGuUCUGCUGCaGCGCGCGguCCa -3'
miRNA:   3'- gcaaCCUuAGACGGUGcCGCGCGC--GG- -5'
21346 3' -57.3 NC_004778.3 + 10721 0.68 0.714689
Target:  5'- gGUUGGAccgCUGuucgcugcgcgcuCCGCGGgcugccgugUGCGCGCCg -3'
miRNA:   3'- gCAACCUua-GAC-------------GGUGCC---------GCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 31743 0.7 0.594191
Target:  5'- --aUGGAGUUUaa-GCGGCGCGuCGCCa -3'
miRNA:   3'- gcaACCUUAGAcggUGCCGCGC-GCGG- -5'
21346 3' -57.3 NC_004778.3 + 35035 0.67 0.791909
Target:  5'- ---cGGAggCUGCgugacuuuCACGGUGCGuCGCUa -3'
miRNA:   3'- gcaaCCUuaGACG--------GUGCCGCGC-GCGG- -5'
21346 3' -57.3 NC_004778.3 + 88689 0.67 0.791909
Target:  5'- ---cGGGAUgUcGCCgcgcagcaaGCGGCGCGUGCg -3'
miRNA:   3'- gcaaCCUUAgA-CGG---------UGCCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 61627 0.67 0.800889
Target:  5'- gCGuUUGGc----GCCGCGcagccaGCGCGCGCCa -3'
miRNA:   3'- -GC-AACCuuagaCGGUGC------CGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 28811 0.67 0.800889
Target:  5'- ---aGGAAaC-GCCGCGGC-CGCGCa -3'
miRNA:   3'- gcaaCCUUaGaCGGUGCCGcGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 28060 0.66 0.817525
Target:  5'- --cUGGAacaugcuAUCUGCCACGcaGCagGUGUGCCc -3'
miRNA:   3'- gcaACCU-------UAGACGGUGC--CG--CGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.