miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21346 3' -57.3 NC_004778.3 + 7143 0.7 0.61452
Target:  5'- ---aGGAAUCcGUCuCGGCgggcgGCGCGCCg -3'
miRNA:   3'- gcaaCCUUAGaCGGuGCCG-----CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 31743 0.7 0.594191
Target:  5'- --aUGGAGUUUaa-GCGGCGCGuCGCCa -3'
miRNA:   3'- gcaACCUUAGAcggUGCCGCGC-GCGG- -5'
21346 3' -57.3 NC_004778.3 + 63504 0.71 0.573972
Target:  5'- ---cGGGcUCaUGCUGCGGCG-GCGCCa -3'
miRNA:   3'- gcaaCCUuAG-ACGGUGCCGCgCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 53668 0.71 0.553916
Target:  5'- uCGUUGaGGcgCUGCCcaauGCGGCGCaaaacaaCGCCg -3'
miRNA:   3'- -GCAAC-CUuaGACGG----UGCCGCGc------GCGG- -5'
21346 3' -57.3 NC_004778.3 + 46401 0.72 0.504804
Target:  5'- -------cUCUGCCACucuuuGGCGCGUGCCg -3'
miRNA:   3'- gcaaccuuAGACGGUG-----CCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 35782 0.68 0.745047
Target:  5'- gGUUGGcGGUCUGCgaAUGGUGUGUGUUu -3'
miRNA:   3'- gCAACC-UUAGACGg-UGCCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 31228 0.68 0.745047
Target:  5'- aGUUaGAGgcguugCUGuCCGUGGCGCGCGCa -3'
miRNA:   3'- gCAAcCUUa-----GAC-GGUGCCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 95755 0.68 0.753696
Target:  5'- -uUUGGAGcCgcGCCgggcgcuauccgcGCGGCaGCGCGCCg -3'
miRNA:   3'- gcAACCUUaGa-CGG-------------UGCCG-CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 55273 0.66 0.826884
Target:  5'- --cUGGAAguguacgaGUCGCuGGCGCGCGCa -3'
miRNA:   3'- gcaACCUUaga-----CGGUG-CCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 44919 0.66 0.826884
Target:  5'- aGUUGacuauaaacGGcgCUGCUguACcGCGCGCGCCc -3'
miRNA:   3'- gCAAC---------CUuaGACGG--UGcCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 1663 0.66 0.826884
Target:  5'- uCGUUGGcaccuUCgGUUugGGUGCG-GCCa -3'
miRNA:   3'- -GCAACCuu---AGaCGGugCCGCGCgCGG- -5'
21346 3' -57.3 NC_004778.3 + 28060 0.66 0.817525
Target:  5'- --cUGGAacaugcuAUCUGCCACGcaGCagGUGUGCCc -3'
miRNA:   3'- gcaACCU-------UAGACGGUGC--CG--CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 28811 0.67 0.800889
Target:  5'- ---aGGAAaC-GCCGCGGC-CGCGCa -3'
miRNA:   3'- gcaaCCUUaGaCGGUGCCGcGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 61627 0.67 0.800889
Target:  5'- gCGuUUGGc----GCCGCGcagccaGCGCGCGCCa -3'
miRNA:   3'- -GC-AACCuuagaCGGUGC------CGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 88689 0.67 0.791909
Target:  5'- ---cGGGAUgUcGCCgcgcagcaaGCGGCGCGUGCg -3'
miRNA:   3'- gcaaCCUUAgA-CGG---------UGCCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 3996 0.67 0.791909
Target:  5'- gCGUUGGGAaggGCCACGcacGUcgGCGCGUCc -3'
miRNA:   3'- -GCAACCUUagaCGGUGC---CG--CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 104349 0.67 0.783706
Target:  5'- aCGUUGGccg--GCguacgugacucgguCGGCGCGCGCCu -3'
miRNA:   3'- -GCAACCuuagaCGgu------------GCCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 41840 0.67 0.782788
Target:  5'- gCGUUGGAGaacugGCuCGCGGCGCaaccCGUCg -3'
miRNA:   3'- -GCAACCUUaga--CG-GUGCCGCGc---GCGG- -5'
21346 3' -57.3 NC_004778.3 + 26061 0.67 0.782788
Target:  5'- uCGUUGccaccgccGUCgugGCCACGGCGCuguacauaaucGCGCUu -3'
miRNA:   3'- -GCAACcu------UAGa--CGGUGCCGCG-----------CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 45458 0.67 0.76415
Target:  5'- aGgcGGAAcucgCUGCCGCGGUcgggcaacucGCGCGgaCCg -3'
miRNA:   3'- gCaaCCUUa---GACGGUGCCG----------CGCGC--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.