miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21346 3' -57.3 NC_004778.3 + 35035 0.67 0.791909
Target:  5'- ---cGGAggCUGCgugacuuuCACGGUGCGuCGCUa -3'
miRNA:   3'- gcaaCCUuaGACG--------GUGCCGCGC-GCGG- -5'
21346 3' -57.3 NC_004778.3 + 3996 0.67 0.791909
Target:  5'- gCGUUGGGAaggGCCACGcacGUcgGCGCGUCc -3'
miRNA:   3'- -GCAACCUUagaCGGUGC---CG--CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 104349 0.67 0.783706
Target:  5'- aCGUUGGccg--GCguacgugacucgguCGGCGCGCGCCu -3'
miRNA:   3'- -GCAACCuuagaCGgu------------GCCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 41840 0.67 0.782788
Target:  5'- gCGUUGGAGaacugGCuCGCGGCGCaaccCGUCg -3'
miRNA:   3'- -GCAACCUUaga--CG-GUGCCGCGc---GCGG- -5'
21346 3' -57.3 NC_004778.3 + 26061 0.67 0.782788
Target:  5'- uCGUUGccaccgccGUCgugGCCACGGCGCuguacauaaucGCGCUu -3'
miRNA:   3'- -GCAACcu------UAGa--CGGUGCCGCG-----------CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 57927 0.67 0.76415
Target:  5'- uGUcGGAAUacguguggcgcUUGgCGCGGCGgGCGUCg -3'
miRNA:   3'- gCAaCCUUA-----------GACgGUGCCGCgCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 43893 0.67 0.76415
Target:  5'- gCGgUGGAcacaugAUgUGUCcCGGCGCgGCGCCc -3'
miRNA:   3'- -GCaACCU------UAgACGGuGCCGCG-CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 45458 0.67 0.76415
Target:  5'- aGgcGGAAcucgCUGCCGCGGUcgggcaacucGCGCGgaCCg -3'
miRNA:   3'- gCaaCCUUa---GACGGUGCCG----------CGCGC--GG- -5'
21346 3' -57.3 NC_004778.3 + 32820 0.68 0.754652
Target:  5'- --------gCUGCCGCGGCGCGUGgUg -3'
miRNA:   3'- gcaaccuuaGACGGUGCCGCGCGCgG- -5'
21346 3' -57.3 NC_004778.3 + 95755 0.68 0.753696
Target:  5'- -uUUGGAGcCgcGCCgggcgcuauccgcGCGGCaGCGCGCCg -3'
miRNA:   3'- gcAACCUUaGa-CGG-------------UGCCG-CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 35782 0.68 0.745047
Target:  5'- gGUUGGcGGUCUGCgaAUGGUGUGUGUUu -3'
miRNA:   3'- gCAACC-UUAGACGg-UGCCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 31228 0.68 0.745047
Target:  5'- aGUUaGAGgcguugCUGuCCGUGGCGCGCGCa -3'
miRNA:   3'- gCAAcCUUa-----GAC-GGUGCCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 1136 0.68 0.745047
Target:  5'- gCGUUGGAGgccgCUGCUGCGcCGauCGaCGCCg -3'
miRNA:   3'- -GCAACCUUa---GACGGUGCcGC--GC-GCGG- -5'
21346 3' -57.3 NC_004778.3 + 118854 0.68 0.735344
Target:  5'- ---cGGAA-CaGaCACGGCGCGCGCa -3'
miRNA:   3'- gcaaCCUUaGaCgGUGCCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 37789 0.68 0.735344
Target:  5'- --gUGGugccgGUCACGGCGC-CGCCg -3'
miRNA:   3'- gcaACCuuagaCGGUGCCGCGcGCGG- -5'
21346 3' -57.3 NC_004778.3 + 61973 0.68 0.725552
Target:  5'- uGUcgGGGcgCuUGCCGCuGCGCGUgGCCa -3'
miRNA:   3'- gCAa-CCUuaG-ACGGUGcCGCGCG-CGG- -5'
21346 3' -57.3 NC_004778.3 + 15451 0.68 0.725552
Target:  5'- --aUGGGAUCUGCCGaguuuaGCGCGUaGCUc -3'
miRNA:   3'- gcaACCUUAGACGGUgc----CGCGCG-CGG- -5'
21346 3' -57.3 NC_004778.3 + 121606 0.68 0.71568
Target:  5'- ---cGGGuUCUGCUGCaGCGCGCGguCCa -3'
miRNA:   3'- gcaaCCUuAGACGGUGcCGCGCGC--GG- -5'
21346 3' -57.3 NC_004778.3 + 10721 0.68 0.714689
Target:  5'- gGUUGGAccgCUGuucgcugcgcgcuCCGCGGgcugccgugUGCGCGCCg -3'
miRNA:   3'- gCAACCUua-GAC-------------GGUGCC---------GCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 97366 0.68 0.709723
Target:  5'- uGUUGGGcaucgcguAUUUGCUgaccgccaucgugugGCGGCGCGCaaggaaGCCg -3'
miRNA:   3'- gCAACCU--------UAGACGG---------------UGCCGCGCG------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.