Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21346 | 5' | -49.8 | NC_004778.3 | + | 6191 | 0.66 | 0.996381 |
Target: 5'- uCGuGGGC-CCGcg-AGUCAAuggCGCg -3' miRNA: 3'- -GCuCCCGcGGCauaUCAGUUuuaGCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 32283 | 0.66 | 0.995324 |
Target: 5'- cCGGcGGCGCCGUGUcgggcuggugcuuaaAGUCcAGGcCGCu -3' miRNA: 3'- -GCUcCCGCGGCAUA---------------UCAGuUUUaGCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 33183 | 0.66 | 0.995024 |
Target: 5'- uGAcGGGcCGCCGUAcuuuGUgGAcuUCGCg -3' miRNA: 3'- gCU-CCC-GCGGCAUau--CAgUUuuAGCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 117996 | 0.66 | 0.994206 |
Target: 5'- -cGGGGCGgUGgaAUAcUCAAAAUCGCu -3' miRNA: 3'- gcUCCCGCgGCa-UAUcAGUUUUAGCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 95074 | 0.67 | 0.99338 |
Target: 5'- uCGGuGGCGCUGUcGUAGUCAcucacguagccuucAUCGCa -3' miRNA: 3'- -GCUcCCGCGGCA-UAUCAGUuu------------UAGCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 21085 | 0.67 | 0.992245 |
Target: 5'- --cGGGCgGCCGgcUGGgcugcggCAuuAUCGCa -3' miRNA: 3'- gcuCCCG-CGGCauAUCa------GUuuUAGCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 42500 | 0.68 | 0.986763 |
Target: 5'- uGAGGGCGgCGU--GGUCGGcg-UGCc -3' miRNA: 3'- gCUCCCGCgGCAuaUCAGUUuuaGCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 57267 | 0.68 | 0.986763 |
Target: 5'- -cGGGGCccagcaccGCCGUAaAGUUGGAGUgCGCg -3' miRNA: 3'- gcUCCCG--------CGGCAUaUCAGUUUUA-GCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 71164 | 0.68 | 0.985013 |
Target: 5'- gCGGGGGCGuuGgcgaggaAGUCGGcaaggguGUCGCc -3' miRNA: 3'- -GCUCCCGCggCaua----UCAGUUu------UAGCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 43727 | 0.68 | 0.983882 |
Target: 5'- aCGGGGGCGCCGcgccgggacacaucaUGU-GUCcaccgCGCg -3' miRNA: 3'- -GCUCCCGCGGC---------------AUAuCAGuuuuaGCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 6977 | 0.68 | 0.982686 |
Target: 5'- aGGGGGCGCCcGUcGUGGUguuuccgCGCg -3' miRNA: 3'- gCUCCCGCGG-CA-UAUCAguuuua-GCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 112345 | 0.69 | 0.973514 |
Target: 5'- gCGAGGGCGCCGagaa--CGAAGU-GCa -3' miRNA: 3'- -GCUCCCGCGGCauaucaGUUUUAgCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 6834 | 0.69 | 0.970603 |
Target: 5'- aCGAcGGGCGCCcccuGUGUGGacgCAGGcggCGCg -3' miRNA: 3'- -GCU-CCCGCGG----CAUAUCa--GUUUua-GCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 92183 | 0.69 | 0.96747 |
Target: 5'- -cAGGGCGUCGUA---UCAAAA-CGCg -3' miRNA: 3'- gcUCCCGCGGCAUaucAGUUUUaGCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 5737 | 0.7 | 0.952581 |
Target: 5'- aCGGGuGGCGCuCGUcuuucggAGUCAAGuuGUUGCg -3' miRNA: 3'- -GCUC-CCGCG-GCAua-----UCAGUUU--UAGCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 36321 | 0.7 | 0.952581 |
Target: 5'- gGAGGGCGUgGUcGUAccgggcGUCAu-GUCGCg -3' miRNA: 3'- gCUCCCGCGgCA-UAU------CAGUuuUAGCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 45758 | 0.7 | 0.952581 |
Target: 5'- aCGAGGGCGCgGcUAUG--CAGAAggCGCg -3' miRNA: 3'- -GCUCCCGCGgC-AUAUcaGUUUUa-GCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 101053 | 0.7 | 0.948242 |
Target: 5'- uGAGGGCGUCGUugAGgcc--GUCGCc -3' miRNA: 3'- gCUCCCGCGGCAuaUCaguuuUAGCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 85414 | 0.77 | 0.666999 |
Target: 5'- aCGcGGGCGCCGUGUAuGUCGucguUUGCc -3' miRNA: 3'- -GCuCCCGCGGCAUAU-CAGUuuu-AGCG- -5' |
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21346 | 5' | -49.8 | NC_004778.3 | + | 8091 | 0.78 | 0.624179 |
Target: 5'- aCGAGGGCgGCCGUGagugGGUCAuuGaCGCc -3' miRNA: 3'- -GCUCCCG-CGGCAUa---UCAGUuuUaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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