miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21347 3' -54.5 NC_004778.3 + 1684 0.68 0.84244
Target:  5'- gUgCgGCCAGCagcGCGAGCAGgCGCa -3'
miRNA:   3'- gAgGgUGGUUGcuuUGCUCGUCgGCG- -5'
21347 3' -54.5 NC_004778.3 + 2216 0.66 0.925382
Target:  5'- -aCCCGCCccacAAUGAGGaacGCGGCUGCg -3'
miRNA:   3'- gaGGGUGG----UUGCUUUgcuCGUCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 8104 0.66 0.925382
Target:  5'- gUgCUACCAuUGGAcgaGGGCGGCCGUg -3'
miRNA:   3'- gAgGGUGGUuGCUUug-CUCGUCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 8796 0.67 0.894904
Target:  5'- -cUUCAgCGGCGAGGCG-GCGGgCGCg -3'
miRNA:   3'- gaGGGUgGUUGCUUUGCuCGUCgGCG- -5'
21347 3' -54.5 NC_004778.3 + 9602 0.68 0.858517
Target:  5'- -cUgCGCCGcCGAGACGA-CGGCCGUg -3'
miRNA:   3'- gaGgGUGGUuGCUUUGCUcGUCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 10453 0.72 0.649768
Target:  5'- -gCCCGcucCCAACGAAgucGCGAGCGccuuugcaaugcGCCGCc -3'
miRNA:   3'- gaGGGU---GGUUGCUU---UGCUCGU------------CGGCG- -5'
21347 3' -54.5 NC_004778.3 + 13278 0.69 0.789721
Target:  5'- aUCCCucGCCAGCGcauccaacACGGGCAGgUGCc -3'
miRNA:   3'- gAGGG--UGGUUGCuu------UGCUCGUCgGCG- -5'
21347 3' -54.5 NC_004778.3 + 21191 0.77 0.361617
Target:  5'- -gCUCGCCGGCG-GACGuGCAGCCGUu -3'
miRNA:   3'- gaGGGUGGUUGCuUUGCuCGUCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 22757 0.68 0.850581
Target:  5'- -aCCCAUUGGC--AACGAGCAcuuuuuGCCGCg -3'
miRNA:   3'- gaGGGUGGUUGcuUUGCUCGU------CGGCG- -5'
21347 3' -54.5 NC_004778.3 + 26157 0.7 0.770879
Target:  5'- -aCCCaaccgaagaaaaGCCAGCGugcGACGuGCAGCaCGCu -3'
miRNA:   3'- gaGGG------------UGGUUGCu--UUGCuCGUCG-GCG- -5'
21347 3' -54.5 NC_004778.3 + 29755 0.71 0.711586
Target:  5'- aUCCCAUUAACGAcGACGcguuuguuAGCAGCCu- -3'
miRNA:   3'- gAGGGUGGUUGCU-UUGC--------UCGUCGGcg -5'
21347 3' -54.5 NC_004778.3 + 31091 0.66 0.940239
Target:  5'- uUCCUugCcguacuuGACGccauCGAuGCGGCCGCa -3'
miRNA:   3'- gAGGGugG-------UUGCuuu-GCU-CGUCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 32416 0.67 0.894904
Target:  5'- -gCCgGCCAGCGugcGCGguuGGCAggacGCCGCg -3'
miRNA:   3'- gaGGgUGGUUGCuu-UGC---UCGU----CGGCG- -5'
21347 3' -54.5 NC_004778.3 + 32443 0.66 0.940714
Target:  5'- -cUgCAUCAGCau-GCGGcGCAGCCGCu -3'
miRNA:   3'- gaGgGUGGUUGcuuUGCU-CGUCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 32479 0.67 0.907827
Target:  5'- uUUgCACCAGCGGucguggcacGCGAGCuugaacauGGCUGCg -3'
miRNA:   3'- gAGgGUGGUUGCUu--------UGCUCG--------UCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 32621 0.67 0.901486
Target:  5'- --aCCGCUggugcaaaGGCGAcACGcAGCGGCUGCg -3'
miRNA:   3'- gagGGUGG--------UUGCUuUGC-UCGUCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 32671 0.67 0.894904
Target:  5'- -aCgCACCAcGCGccGCG-GCAGCUGCg -3'
miRNA:   3'- gaGgGUGGU-UGCuuUGCuCGUCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 32848 0.67 0.88103
Target:  5'- aUCUauaCGCUAGCGGcguaGACGcGCAGCUGCc -3'
miRNA:   3'- gAGG---GUGGUUGCU----UUGCuCGUCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 32956 0.68 0.866242
Target:  5'- --aCCGCC-GCGugGCuGuGCGGCCGCg -3'
miRNA:   3'- gagGGUGGuUGCuuUG-CuCGUCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 33630 0.71 0.731734
Target:  5'- gUCCCAUgu-CGucGGCGAGCAcGCCGCc -3'
miRNA:   3'- gAGGGUGguuGCu-UUGCUCGU-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.