miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21347 5' -56.3 NC_004778.3 + 111972 1.11 0.001663
Target:  5'- aUCGCGGCCAAAGCGUCGGCAGUACGCc -3'
miRNA:   3'- -AGCGCCGGUUUCGCAGCCGUCAUGCG- -5'
21347 5' -56.3 NC_004778.3 + 107021 0.81 0.170727
Target:  5'- -gGCuuuaacGCCAGGGCGUCGGCGGUACGg -3'
miRNA:   3'- agCGc-----CGGUUUCGCAGCCGUCAUGCg -5'
21347 5' -56.3 NC_004778.3 + 71518 0.77 0.292627
Target:  5'- gCGuUGGCCAGGGUGUCGGCGGaa-GCu -3'
miRNA:   3'- aGC-GCCGGUUUCGCAGCCGUCaugCG- -5'
21347 5' -56.3 NC_004778.3 + 71302 0.76 0.328413
Target:  5'- gUGuCGGCgAGGGUGUCGGCGGggGCGUa -3'
miRNA:   3'- aGC-GCCGgUUUCGCAGCCGUCa-UGCG- -5'
21347 5' -56.3 NC_004778.3 + 1684 0.76 0.343607
Target:  5'- gUGCGGCCAGcAGCG-CGaGCAG-GCGCa -3'
miRNA:   3'- aGCGCCGGUU-UCGCaGC-CGUCaUGCG- -5'
21347 5' -56.3 NC_004778.3 + 24841 0.76 0.351392
Target:  5'- gUGCGGgCAugugguAGCGUgCGGCAaGUGCGCg -3'
miRNA:   3'- aGCGCCgGUu-----UCGCA-GCCGU-CAUGCG- -5'
21347 5' -56.3 NC_004778.3 + 71374 0.75 0.375489
Target:  5'- gCGUaGGCgAGGGUGUCGGCGGggGCGUa -3'
miRNA:   3'- aGCG-CCGgUUUCGCAGCCGUCa-UGCG- -5'
21347 5' -56.3 NC_004778.3 + 71422 0.75 0.375489
Target:  5'- gCGUaGGCgAGGGUGUCGGCGGggGCGUa -3'
miRNA:   3'- aGCG-CCGgUUUCGCAGCCGUCa-UGCG- -5'
21347 5' -56.3 NC_004778.3 + 26884 0.75 0.392163
Target:  5'- cUGCaGGCCGcGGCGUuugCGGCGGUuuuGCGCa -3'
miRNA:   3'- aGCG-CCGGUuUCGCA---GCCGUCA---UGCG- -5'
21347 5' -56.3 NC_004778.3 + 68591 0.75 0.392163
Target:  5'- -gGCGGCgGcGGCGgCGGCGGUgGCGCu -3'
miRNA:   3'- agCGCCGgUuUCGCaGCCGUCA-UGCG- -5'
21347 5' -56.3 NC_004778.3 + 71470 0.74 0.426919
Target:  5'- gCGUaGGCgAGGGUGUCGGCGGggGCGUu -3'
miRNA:   3'- aGCG-CCGgUUUCGCAGCCGUCa-UGCG- -5'
21347 5' -56.3 NC_004778.3 + 53093 0.74 0.43589
Target:  5'- cUGUGGCgGAGGCGgcugaaaCGGCAGaGCGCc -3'
miRNA:   3'- aGCGCCGgUUUCGCa------GCCGUCaUGCG- -5'
21347 5' -56.3 NC_004778.3 + 106630 0.74 0.439508
Target:  5'- aUCGCGGCCAAuaguugcgcguuuuGCG-CGcGCAGcGCGCu -3'
miRNA:   3'- -AGCGCCGGUUu-------------CGCaGC-CGUCaUGCG- -5'
21347 5' -56.3 NC_004778.3 + 71242 0.73 0.482299
Target:  5'- gUGuCGGCgAGGGUGUCGGCGaaggcGUugGCg -3'
miRNA:   3'- aGC-GCCGgUUUCGCAGCCGU-----CAugCG- -5'
21347 5' -56.3 NC_004778.3 + 35895 0.73 0.500555
Target:  5'- cUCG-GGCgauugguaCAAAGCGUCGGCGuaauuguuguagcGUACGCa -3'
miRNA:   3'- -AGCgCCG--------GUUUCGCAGCCGU-------------CAUGCG- -5'
21347 5' -56.3 NC_004778.3 + 107644 0.73 0.511263
Target:  5'- aUGCGGCCAua-CGUCGGCGGcguuaGCg -3'
miRNA:   3'- aGCGCCGGUuucGCAGCCGUCaug--CG- -5'
21347 5' -56.3 NC_004778.3 + 121409 0.73 0.511263
Target:  5'- gUGCGGCUGAGcagcaggcacGCGUCGGCcGUGuCGCc -3'
miRNA:   3'- aGCGCCGGUUU----------CGCAGCCGuCAU-GCG- -5'
21347 5' -56.3 NC_004778.3 + 33110 0.72 0.530968
Target:  5'- aCGCGGCCGcacAGCcacgCGGCGGUGuCGUc -3'
miRNA:   3'- aGCGCCGGUu--UCGca--GCCGUCAU-GCG- -5'
21347 5' -56.3 NC_004778.3 + 113928 0.72 0.530968
Target:  5'- cUCGCGGagagcGAGCG-CGGCGGaugGCGCa -3'
miRNA:   3'- -AGCGCCggu--UUCGCaGCCGUCa--UGCG- -5'
21347 5' -56.3 NC_004778.3 + 81762 0.72 0.550942
Target:  5'- -gGCGGaCCGAcuGCGcCGGUAgGUGCGCg -3'
miRNA:   3'- agCGCC-GGUUu-CGCaGCCGU-CAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.