miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21348 3' -53.7 NC_004778.3 + 33457 0.66 0.952353
Target:  5'- aG-CGCGGCCgucCGCaCGGCggcGUGCUc -3'
miRNA:   3'- aCaGCGUCGGa--GCG-GCUGauuUACGG- -5'
21348 3' -53.7 NC_004778.3 + 114291 0.66 0.952353
Target:  5'- uUGUCGCuGCCgCGaCCGAUgcguuUGAuaaugGCCg -3'
miRNA:   3'- -ACAGCGuCGGaGC-GGCUG-----AUUua---CGG- -5'
21348 3' -53.7 NC_004778.3 + 90816 0.66 0.952353
Target:  5'- aGUaCGCAGCgUCGaCCGcGCUGAcguugacggcGUGCg -3'
miRNA:   3'- aCA-GCGUCGgAGC-GGC-UGAUU----------UACGg -5'
21348 3' -53.7 NC_004778.3 + 98077 0.66 0.952353
Target:  5'- gUGaCGCAa-CUgGCCGGCgaUAAGUGCCa -3'
miRNA:   3'- -ACaGCGUcgGAgCGGCUG--AUUUACGG- -5'
21348 3' -53.7 NC_004778.3 + 25802 0.66 0.948082
Target:  5'- --aCGCuGCCcCGCCGcGCU-AGUGCUg -3'
miRNA:   3'- acaGCGuCGGaGCGGC-UGAuUUACGG- -5'
21348 3' -53.7 NC_004778.3 + 21118 0.66 0.943564
Target:  5'- --aCGUuGCCcagaUCGCCGAC---GUGCCg -3'
miRNA:   3'- acaGCGuCGG----AGCGGCUGauuUACGG- -5'
21348 3' -53.7 NC_004778.3 + 102867 0.66 0.943564
Target:  5'- aUGUCGguGaUgUCGCUaaGACUGGugguGUGCCc -3'
miRNA:   3'- -ACAGCguC-GgAGCGG--CUGAUU----UACGG- -5'
21348 3' -53.7 NC_004778.3 + 127803 0.66 0.938798
Target:  5'- cGUCGCGGCauuuugugaCGCUGACgcgcAUGCg -3'
miRNA:   3'- aCAGCGUCGga-------GCGGCUGauu-UACGg -5'
21348 3' -53.7 NC_004778.3 + 111972 0.66 0.938798
Target:  5'- -aUCGCGGCCaaagCGUCGGCaguacGCCu -3'
miRNA:   3'- acAGCGUCGGa---GCGGCUGauuuaCGG- -5'
21348 3' -53.7 NC_004778.3 + 49733 0.66 0.938798
Target:  5'- cUGUCGguGCCagUCGCUaGGCaauacAAGUGCUu -3'
miRNA:   3'- -ACAGCguCGG--AGCGG-CUGa----UUUACGG- -5'
21348 3' -53.7 NC_004778.3 + 93144 0.66 0.93378
Target:  5'- --aCGCGGCCggCGgCGACUu--UGUCg -3'
miRNA:   3'- acaGCGUCGGa-GCgGCUGAuuuACGG- -5'
21348 3' -53.7 NC_004778.3 + 49505 0.66 0.93378
Target:  5'- cGUUGCGgcacGCCUCGUCGG--GAAUGUUg -3'
miRNA:   3'- aCAGCGU----CGGAGCGGCUgaUUUACGG- -5'
21348 3' -53.7 NC_004778.3 + 16465 0.66 0.93378
Target:  5'- cUG-CGCAGUUaucaCGCCGACgcc-UGCCg -3'
miRNA:   3'- -ACaGCGUCGGa---GCGGCUGauuuACGG- -5'
21348 3' -53.7 NC_004778.3 + 40683 0.66 0.931702
Target:  5'- aGUCGC-GCCaaugaaugcgacgCGCCGGCgucgAAGcGCCg -3'
miRNA:   3'- aCAGCGuCGGa------------GCGGCUGa---UUUaCGG- -5'
21348 3' -53.7 NC_004778.3 + 62899 0.67 0.922988
Target:  5'- aGUCGCAGCaguagCGCCaugucGCU---UGCCa -3'
miRNA:   3'- aCAGCGUCGga---GCGGc----UGAuuuACGG- -5'
21348 3' -53.7 NC_004778.3 + 43844 0.67 0.922988
Target:  5'- uUG-CGCGGCCgu-CCGACgcggcaacAGGUGCCg -3'
miRNA:   3'- -ACaGCGUCGGagcGGCUGa-------UUUACGG- -5'
21348 3' -53.7 NC_004778.3 + 80283 0.67 0.922988
Target:  5'- ---gGCAGCUcaUCGcCCGACUGGgcGUGCa -3'
miRNA:   3'- acagCGUCGG--AGC-GGCUGAUU--UACGg -5'
21348 3' -53.7 NC_004778.3 + 124488 0.67 0.917213
Target:  5'- gGUCGCcGCCuuucuuacUCGCCGGaaGAcgccGUGCCc -3'
miRNA:   3'- aCAGCGuCGG--------AGCGGCUgaUU----UACGG- -5'
21348 3' -53.7 NC_004778.3 + 121439 0.67 0.916621
Target:  5'- gUGUCGCcGCCgucggCGCCGcgcacauAgUAAcUGCCg -3'
miRNA:   3'- -ACAGCGuCGGa----GCGGC-------UgAUUuACGG- -5'
21348 3' -53.7 NC_004778.3 + 20933 0.67 0.904908
Target:  5'- aUGcCGCAGCC-CaGCCGGCcgcccgauUGCCc -3'
miRNA:   3'- -ACaGCGUCGGaG-CGGCUGauuu----ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.