miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21348 5' -57.7 NC_004778.3 + 47132 0.69 0.632552
Target:  5'- aCAAGCGCGuCGG-CGUG-AGCgccGGCg -3'
miRNA:   3'- -GUUCGCGC-GCCaGCGCgUCGaauCCG- -5'
21348 5' -57.7 NC_004778.3 + 8806 0.68 0.653101
Target:  5'- gAGGCG-GCGGgCGCGCucAGCgaauGGCg -3'
miRNA:   3'- gUUCGCgCGCCaGCGCG--UCGaau-CCG- -5'
21348 5' -57.7 NC_004778.3 + 110105 0.68 0.653101
Target:  5'- -cGGCGUGCGcGcCGaGC-GCUUGGGCa -3'
miRNA:   3'- guUCGCGCGC-CaGCgCGuCGAAUCCG- -5'
21348 5' -57.7 NC_004778.3 + 58308 0.68 0.663355
Target:  5'- -cGGCGaCGuCGGguggCGCGCugGGCUUugcAGGCg -3'
miRNA:   3'- guUCGC-GC-GCCa---GCGCG--UCGAA---UCCG- -5'
21348 5' -57.7 NC_004778.3 + 116050 0.68 0.663355
Target:  5'- -cGGCGUGCGcaugUGUGCGGCcccUAGGCu -3'
miRNA:   3'- guUCGCGCGCca--GCGCGUCGa--AUCCG- -5'
21348 5' -57.7 NC_004778.3 + 64298 0.68 0.67154
Target:  5'- aCGGGCGCGa---CGCGCugagugaccguuGCUUGGGCg -3'
miRNA:   3'- -GUUCGCGCgccaGCGCGu-----------CGAAUCCG- -5'
21348 5' -57.7 NC_004778.3 + 124292 0.68 0.673583
Target:  5'- uCAAGaaugcugaaGCGCGG-CGC-CGGCgUGGGCa -3'
miRNA:   3'- -GUUCg--------CGCGCCaGCGcGUCGaAUCCG- -5'
21348 5' -57.7 NC_004778.3 + 121618 0.68 0.683777
Target:  5'- -cAGCGCGCGGUCcacgcCGuCGGCcgAGcGCa -3'
miRNA:   3'- guUCGCGCGCCAGc----GC-GUCGaaUC-CG- -5'
21348 5' -57.7 NC_004778.3 + 81773 0.68 0.683777
Target:  5'- --uGCGC-CGGUaggUGCGCGGCcugccgGGGCg -3'
miRNA:   3'- guuCGCGcGCCA---GCGCGUCGaa----UCCG- -5'
21348 5' -57.7 NC_004778.3 + 37830 0.68 0.683777
Target:  5'- -cAGCGCGCGGcgacacgCGUGguGCUUAucgacGCg -3'
miRNA:   3'- guUCGCGCGCCa------GCGCguCGAAUc----CG- -5'
21348 5' -57.7 NC_004778.3 + 27963 0.68 0.693928
Target:  5'- cCGAGCGCgacaaGCGGcCcgugcaugcgGUGCAGCgcGGGCa -3'
miRNA:   3'- -GUUCGCG-----CGCCaG----------CGCGUCGaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 25099 0.68 0.693928
Target:  5'- gGGGUGCGCgGGUgGCGgAGa--GGGCa -3'
miRNA:   3'- gUUCGCGCG-CCAgCGCgUCgaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 10268 0.68 0.693928
Target:  5'- --uGCGCGCGGgaccggCgGCGCAuuGCaaAGGCg -3'
miRNA:   3'- guuCGCGCGCCa-----G-CGCGU--CGaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 53237 0.68 0.704027
Target:  5'- -cGGCG-GCGGUUGCuGCGGC---GGCg -3'
miRNA:   3'- guUCGCgCGCCAGCG-CGUCGaauCCG- -5'
21348 5' -57.7 NC_004778.3 + 53207 0.68 0.704027
Target:  5'- -cGGCG-GCGGUUGCuGCGGC---GGCg -3'
miRNA:   3'- guUCGCgCGCCAGCG-CGUCGaauCCG- -5'
21348 5' -57.7 NC_004778.3 + 15363 0.68 0.704027
Target:  5'- -uGGCGCGCGGuUUGCcCGGCUUGaucaGCu -3'
miRNA:   3'- guUCGCGCGCC-AGCGcGUCGAAUc---CG- -5'
21348 5' -57.7 NC_004778.3 + 2618 0.67 0.722045
Target:  5'- gAAGCGgGUGGUCGauaaccaGCGGCgugccgcacucGGGCc -3'
miRNA:   3'- gUUCGCgCGCCAGCg------CGUCGaa---------UCCG- -5'
21348 5' -57.7 NC_004778.3 + 17109 0.67 0.722045
Target:  5'- --uGCGCGCGG-CGCGCcuaccguGGCa -3'
miRNA:   3'- guuCGCGCGCCaGCGCGucgaau-CCG- -5'
21348 5' -57.7 NC_004778.3 + 120965 0.67 0.724032
Target:  5'- gGGGCGCG-GGcCGCGCccGCUgccccGGCg -3'
miRNA:   3'- gUUCGCGCgCCaGCGCGu-CGAau---CCG- -5'
21348 5' -57.7 NC_004778.3 + 86769 0.67 0.73392
Target:  5'- gAAGCGCGCcgacguGUUGCGCAGCa----- -3'
miRNA:   3'- gUUCGCGCGc-----CAGCGCGUCGaauccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.