miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21348 5' -57.7 NC_004778.3 + 2618 0.67 0.722045
Target:  5'- gAAGCGgGUGGUCGauaaccaGCGGCgugccgcacucGGGCc -3'
miRNA:   3'- gUUCGCgCGCCAGCg------CGUCGaa---------UCCG- -5'
21348 5' -57.7 NC_004778.3 + 5102 0.67 0.753418
Target:  5'- --uGUGCGCGaaCGUGCAGCUcgcgcuGGCc -3'
miRNA:   3'- guuCGCGCGCcaGCGCGUCGAau----CCG- -5'
21348 5' -57.7 NC_004778.3 + 5606 0.66 0.781834
Target:  5'- gCAGGCGCGCaGUUGC-CuuuGUUUugGGGCu -3'
miRNA:   3'- -GUUCGCGCGcCAGCGcGu--CGAA--UCCG- -5'
21348 5' -57.7 NC_004778.3 + 7155 0.67 0.76301
Target:  5'- -cGGCGgGCGG-CGCGCcgagcacuAGCUcguugAGGUg -3'
miRNA:   3'- guUCGCgCGCCaGCGCG--------UCGAa----UCCG- -5'
21348 5' -57.7 NC_004778.3 + 7860 0.66 0.79741
Target:  5'- -cAGCauaaGCGCGGUgGCGCccacguuuaccuuuAGCaUUAGGUc -3'
miRNA:   3'- guUCG----CGCGCCAgCGCG--------------UCG-AAUCCG- -5'
21348 5' -57.7 NC_004778.3 + 8485 0.66 0.80903
Target:  5'- uCAGGCGCGUuccgcaaGCGCGGCgu-GGUa -3'
miRNA:   3'- -GUUCGCGCGccag---CGCGUCGaauCCG- -5'
21348 5' -57.7 NC_004778.3 + 8806 0.68 0.653101
Target:  5'- gAGGCG-GCGGgCGCGCucAGCgaauGGCg -3'
miRNA:   3'- gUUCGCgCGCCaGCGCG--UCGaau-CCG- -5'
21348 5' -57.7 NC_004778.3 + 9903 0.72 0.472821
Target:  5'- gCAAGUGCGCaaUCGCGgAGCg-GGGCa -3'
miRNA:   3'- -GUUCGCGCGccAGCGCgUCGaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 10268 0.68 0.693928
Target:  5'- --uGCGCGCGGgaccggCgGCGCAuuGCaaAGGCg -3'
miRNA:   3'- guuCGCGCGCCa-----G-CGCGU--CGaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 10884 0.66 0.781834
Target:  5'- -cAGCcCGCGGagCGCGCAGCgaacaGCg -3'
miRNA:   3'- guUCGcGCGCCa-GCGCGUCGaauc-CG- -5'
21348 5' -57.7 NC_004778.3 + 15363 0.68 0.704027
Target:  5'- -uGGCGCGCGGuUUGCcCGGCUUGaucaGCu -3'
miRNA:   3'- guUCGCGCGCC-AGCGcGUCGAAUc---CG- -5'
21348 5' -57.7 NC_004778.3 + 15602 0.72 0.463437
Target:  5'- ----gGCGUGGUCGCGCGG---AGGCg -3'
miRNA:   3'- guucgCGCGCCAGCGCGUCgaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 17109 0.67 0.722045
Target:  5'- --uGCGCGCGG-CGCGCcuaccguGGCa -3'
miRNA:   3'- guuCGCGCGCCaGCGCGucgaau-CCG- -5'
21348 5' -57.7 NC_004778.3 + 18781 0.67 0.73392
Target:  5'- -cGGCGCGCGG-CGUuuuuuGCucacgGGCgUGGGCa -3'
miRNA:   3'- guUCGCGCGCCaGCG-----CG-----UCGaAUCCG- -5'
21348 5' -57.7 NC_004778.3 + 21243 0.66 0.80903
Target:  5'- aAAGcCGUGCaGUcCGCGCGGC--AGGUu -3'
miRNA:   3'- gUUC-GCGCGcCA-GCGCGUCGaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 25099 0.68 0.693928
Target:  5'- gGGGUGCGCgGGUgGCGgAGa--GGGCa -3'
miRNA:   3'- gUUCGCGCG-CCAgCGCgUCgaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 25649 0.69 0.622272
Target:  5'- gCAAGCuuGCGCGGggGCcgGCGGCgugUGGGUc -3'
miRNA:   3'- -GUUCG--CGCGCCagCG--CGUCGa--AUCCG- -5'
21348 5' -57.7 NC_004778.3 + 27963 0.68 0.693928
Target:  5'- cCGAGCGCgacaaGCGGcCcgugcaugcgGUGCAGCgcGGGCa -3'
miRNA:   3'- -GUUCGCG-----CGCCaG----------CGCGUCGaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 29329 0.7 0.540924
Target:  5'- aAGGUgGCGCGG-CGCGC-GCUgGGGUg -3'
miRNA:   3'- gUUCG-CGCGCCaGCGCGuCGAaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 32841 0.67 0.743718
Target:  5'- --cGCuaGCGGcguagaCGCGCAGCUgccgcGGCg -3'
miRNA:   3'- guuCGcgCGCCa-----GCGCGUCGAau---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.