Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21350 | 3' | -57.9 | NC_004778.3 | + | 83433 | 0.66 | 0.790609 |
|
Target: 5'- -cGAUAGCGCGgagccgCCGCGCcgUUCCgCGc -3' miRNA: 3'- caCUAUUGCGCa-----GGCGCG--AGGGgGUu -5' |
|||||||
| 21350 | 3' | -57.9 | NC_004778.3 | + | 127242 | 0.66 | 0.781349 |
|
Target: 5'- uUGGccacUAGCGCGcuaUCCaGCGCUCCCUgAGu -3' miRNA: 3'- cACU----AUUGCGC---AGG-CGCGAGGGGgUU- -5' |
|||||||
| 21350 | 3' | -57.9 | NC_004778.3 | + | 95783 | 0.66 | 0.752792 |
|
Target: 5'- -cGGcAGCGCGccggCCGCGCUgCgCCCCGu -3' miRNA: 3'- caCUaUUGCGCa---GGCGCGA-G-GGGGUu -5' |
|||||||
| 21350 | 3' | -57.9 | NC_004778.3 | + | 52795 | 0.67 | 0.727246 |
|
Target: 5'- cUGGUGAUGCGUCCGgGCUuuaacuugcaagugcUggaCCCCGAc -3' miRNA: 3'- cACUAUUGCGCAGGCgCGA---------------G---GGGGUU- -5' |
|||||||
| 21350 | 3' | -57.9 | NC_004778.3 | + | 121114 | 0.67 | 0.713246 |
|
Target: 5'- -aGcgGGCGCGgcCCGCGC-CCCgCCAGu -3' miRNA: 3'- caCuaUUGCGCa-GGCGCGaGGG-GGUU- -5' |
|||||||
| 21350 | 3' | -57.9 | NC_004778.3 | + | 45567 | 0.67 | 0.70316 |
|
Target: 5'- -cGuUAACGCG-CacguaGCGCUCCUCCAGc -3' miRNA: 3'- caCuAUUGCGCaGg----CGCGAGGGGGUU- -5' |
|||||||
| 21350 | 3' | -57.9 | NC_004778.3 | + | 15050 | 0.68 | 0.682815 |
|
Target: 5'- uGUGuuugAACGUGUaggCGCGCUCCgCCAc -3' miRNA: 3'- -CACua--UUGCGCAg--GCGCGAGGgGGUu -5' |
|||||||
| 21350 | 3' | -57.9 | NC_004778.3 | + | 43891 | 0.69 | 0.621039 |
|
Target: 5'- gGUGGacacaUGAUGUGUCCcgGCGCggcgCCCCCGu -3' miRNA: 3'- -CACU-----AUUGCGCAGG--CGCGa---GGGGGUu -5' |
|||||||
| 21350 | 3' | -57.9 | NC_004778.3 | + | 115035 | 1.05 | 0.002598 |
|
Target: 5'- uGUGAUAACGCGUCCGCGCUCCCCCAAc -3' miRNA: 3'- -CACUAUUGCGCAGGCGCGAGGGGGUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home