miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21351 3' -55.9 NC_004778.3 + 39108 0.71 0.610745
Target:  5'- aGUAcGugGUGCG-CGGCGgCGACCa- -3'
miRNA:   3'- aUAU-CugCACGCaGUCGCgGCUGGag -5'
21351 3' -55.9 NC_004778.3 + 20131 0.71 0.610745
Target:  5'- --cAGACGUGCccgaaaagcgagGUCGGCGCUGACg-- -3'
miRNA:   3'- auaUCUGCACG------------CAGUCGCGGCUGgag -5'
21351 3' -55.9 NC_004778.3 + 124863 0.72 0.50853
Target:  5'- --cAGACaUGCGUCAuCGCCGACCcCg -3'
miRNA:   3'- auaUCUGcACGCAGUcGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 100081 0.73 0.460096
Target:  5'- -uUAGACaUGCGcCAGCGUCGACCc- -3'
miRNA:   3'- auAUCUGcACGCaGUCGCGGCUGGag -5'
21351 3' -55.9 NC_004778.3 + 99656 0.73 0.460096
Target:  5'- --gAGGCuuuuuuaauuaUGCGUCAGCGCCGACCc- -3'
miRNA:   3'- auaUCUGc----------ACGCAGUCGCGGCUGGag -5'
21351 3' -55.9 NC_004778.3 + 89127 0.74 0.441414
Target:  5'- --aAGACGcGCGUUucgccuGCGCCGAUCUCc -3'
miRNA:   3'- auaUCUGCaCGCAGu-----CGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 90386 0.74 0.432236
Target:  5'- uUGUGcACGUGCGUCAGCGCgGAgCa- -3'
miRNA:   3'- -AUAUcUGCACGCAGUCGCGgCUgGag -5'
21351 3' -55.9 NC_004778.3 + 49092 0.74 0.42317
Target:  5'- cGUGGGCGaggGCuUCuacaauuGCGCCGACCUCg -3'
miRNA:   3'- aUAUCUGCa--CGcAGu------CGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66900 0.78 0.267924
Target:  5'- --gAGuACG-GCGUCAGgGCCGACCUUg -3'
miRNA:   3'- auaUC-UGCaCGCAGUCgCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122937 0.81 0.17064
Target:  5'- --cAGACaUGCGUCAGCGCCGACUcCa -3'
miRNA:   3'- auaUCUGcACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 99412 0.81 0.157876
Target:  5'- -uUAuACGUGCGUCAGCG-CGACCUCg -3'
miRNA:   3'- auAUcUGCACGCAGUCGCgGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66423 0.83 0.131393
Target:  5'- -------aUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auaucugcACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 124803 0.84 0.103365
Target:  5'- --cAGACaUGCGUCAGCGCCGACCcCg -3'
miRNA:   3'- auaUCUGcACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 124925 0.84 0.103365
Target:  5'- --cAGACaUGCGUCAGCGCCGACCcCg -3'
miRNA:   3'- auaUCUGcACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 23968 0.84 0.100623
Target:  5'- --gAGACaUGCGUCAGCGCCGACCcCg -3'
miRNA:   3'- auaUCUGcACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 24364 0.84 0.100623
Target:  5'- --gAGACaUGCGUCAGCGCCGACCcCg -3'
miRNA:   3'- auaUCUGcACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 24166 0.84 0.100623
Target:  5'- --gAGACaUGCGUCAGCGCCGACCcCg -3'
miRNA:   3'- auaUCUGcACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 24498 0.88 0.055213
Target:  5'- -uUAGACaUGgGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGcACgCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66483 0.9 0.040712
Target:  5'- -uUAGACGUGCGUCGGCGCCGAUC-Cg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 122139 0.91 0.039595
Target:  5'- aAUA-ACGUGCGUCAGCGCCGACCUUg -3'
miRNA:   3'- aUAUcUGCACGCAGUCGCGGCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.