miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21351 5' -46 NC_004778.3 + 4162 0.66 0.999904
Target:  5'- ----uGCGAGgacGCgcc-GACGUGCGUg -3'
miRNA:   3'- cuuuuCGCUCa--CGauauUUGCACGCA- -5'
21351 5' -46 NC_004778.3 + 77869 0.66 0.999895
Target:  5'- ----cGCGGGUGUgcUGAggucguagauccgcACGUGCGUc -3'
miRNA:   3'- cuuuuCGCUCACGauAUU--------------UGCACGCA- -5'
21351 5' -46 NC_004778.3 + 113025 0.66 0.999873
Target:  5'- ----cGaCGAGUGCUGUAGugGcGCa- -3'
miRNA:   3'- cuuuuC-GCUCACGAUAUUugCaCGca -5'
21351 5' -46 NC_004778.3 + 99704 0.66 0.999833
Target:  5'- cGAAAAaCGAGUGUUuuuUAAACaUGCGUc -3'
miRNA:   3'- -CUUUUcGCUCACGAu--AUUUGcACGCA- -5'
21351 5' -46 NC_004778.3 + 97436 0.66 0.999833
Target:  5'- ---cAGCGAGUGCa--AAugGUGCc- -3'
miRNA:   3'- cuuuUCGCUCACGauaUUugCACGca -5'
21351 5' -46 NC_004778.3 + 31423 0.67 0.999721
Target:  5'- uGAAAcauAGCGAGcGCUuuAUAGACGcagUGCGa -3'
miRNA:   3'- -CUUU---UCGCUCaCGA--UAUUUGC---ACGCa -5'
21351 5' -46 NC_004778.3 + 8353 0.67 0.999547
Target:  5'- cAAuuGCGAGUGCacUGAGCaGUGUGa -3'
miRNA:   3'- cUUuuCGCUCACGauAUUUG-CACGCa -5'
21351 5' -46 NC_004778.3 + 14488 0.68 0.999286
Target:  5'- cGAGuuGGGCGAGUGCgauu-GCG-GCGa -3'
miRNA:   3'- -CUU--UUCGCUCACGauauuUGCaCGCa -5'
21351 5' -46 NC_004778.3 + 33386 0.68 0.999286
Target:  5'- uGAAAGUGcAGUGCUGcGGuUGUGCGg -3'
miRNA:   3'- cUUUUCGC-UCACGAUaUUuGCACGCa -5'
21351 5' -46 NC_004778.3 + 24449 0.69 0.99801
Target:  5'- -uAAAGCGAaUGCcaauuugAGACGUGCGUc -3'
miRNA:   3'- cuUUUCGCUcACGaua----UUUGCACGCA- -5'
21351 5' -46 NC_004778.3 + 24052 0.69 0.99801
Target:  5'- -uAAAGCGAaUGCcaauuugAGACGUGCGUc -3'
miRNA:   3'- cuUUUCGCUcACGaua----UUUGCACGCA- -5'
21351 5' -46 NC_004778.3 + 24250 0.69 0.99801
Target:  5'- -uAAAGCGAaUGCcaauuugAGACGUGCGUc -3'
miRNA:   3'- cuUUUCGCUcACGaua----UUUGCACGCA- -5'
21351 5' -46 NC_004778.3 + 16674 0.69 0.99801
Target:  5'- ---uGGUGGGgaugggcGCUGUGAGCGUGCu- -3'
miRNA:   3'- cuuuUCGCUCa------CGAUAUUUGCACGca -5'
21351 5' -46 NC_004778.3 + 19883 0.69 0.997601
Target:  5'- ---cGGCGccgaccucgcAGUGCUAUcuuACGUGCGUc -3'
miRNA:   3'- cuuuUCGC----------UCACGAUAuu-UGCACGCA- -5'
21351 5' -46 NC_004778.3 + 12365 0.7 0.993319
Target:  5'- ----cGCGAGUGCauuUGUccaguucAGACGUGCGg -3'
miRNA:   3'- cuuuuCGCUCACG---AUA-------UUUGCACGCa -5'
21351 5' -46 NC_004778.3 + 122282 0.71 0.991143
Target:  5'- uGAAAAaCaAGUGCUAucuuUAGACGUGCGUc -3'
miRNA:   3'- -CUUUUcGcUCACGAU----AUUUGCACGCA- -5'
21351 5' -46 NC_004778.3 + 19777 0.72 0.9825
Target:  5'- --cGAGCGuuaucgaaaaacaAGUGCUAUcuuuAACGUGCGUc -3'
miRNA:   3'- cuuUUCGC-------------UCACGAUAu---UUGCACGCA- -5'
21351 5' -46 NC_004778.3 + 66856 0.73 0.962286
Target:  5'- cGAAAAGCGAG-GCUAucuuUAGGCGUcgGCGc -3'
miRNA:   3'- -CUUUUCGCUCaCGAU----AUUUGCA--CGCa -5'
21351 5' -46 NC_004778.3 + 99600 0.8 0.698159
Target:  5'- cGAAAAGCauGUGCUAuuuuUAGACGUGCGUg -3'
miRNA:   3'- -CUUUUCGcuCACGAU----AUUUGCACGCA- -5'
21351 5' -46 NC_004778.3 + 66793 0.81 0.653636
Target:  5'- cGAAAAaCGAGUGCUAUcuuACGUGCGUc -3'
miRNA:   3'- -CUUUUcGCUCACGAUAuu-UGCACGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.