Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21352 | 3' | -58.2 | NC_004778.3 | + | 119477 | 0.66 | 0.77024 |
Target: 5'- aGCGUCuGAGCUGGAcaGCgaCUC-CGACa -3' miRNA: 3'- cCGCGGuCUCGACCU--UGa-GGGaGCUG- -5' |
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21352 | 3' | -58.2 | NC_004778.3 | + | 81789 | 0.66 | 0.761752 |
Target: 5'- cGGCcuGCCGGGGCggcgucuguaaccaGAACUCCUgCGGCg -3' miRNA: 3'- -CCG--CGGUCUCGac------------CUUGAGGGaGCUG- -5' |
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21352 | 3' | -58.2 | NC_004778.3 | + | 121126 | 0.67 | 0.741598 |
Target: 5'- cGGCGCCGGGGCaGcGGGCgcggCCCgCGcCc -3' miRNA: 3'- -CCGCGGUCUCGaC-CUUGa---GGGaGCuG- -5' |
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21352 | 3' | -58.2 | NC_004778.3 | + | 68237 | 0.67 | 0.741598 |
Target: 5'- uGGCGCUcGGGCUGuucGAACacagCCugCUCGACg -3' miRNA: 3'- -CCGCGGuCUCGAC---CUUGa---GG--GAGCUG- -5' |
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21352 | 3' | -58.2 | NC_004778.3 | + | 34311 | 0.69 | 0.620904 |
Target: 5'- aGUGCCGGcgcguGCUGGAACUggugcagggcgUgCUCGACa -3' miRNA: 3'- cCGCGGUCu----CGACCUUGA-----------GgGAGCUG- -5' |
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21352 | 3' | -58.2 | NC_004778.3 | + | 123412 | 0.7 | 0.550096 |
Target: 5'- aGGaGCUGGAGCUGGAACUgg-UCGACg -3' miRNA: 3'- -CCgCGGUCUCGACCUUGAgggAGCUG- -5' |
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21352 | 3' | -58.2 | NC_004778.3 | + | 123451 | 1.12 | 0.000968 |
Target: 5'- uGGCGCCAGAGCUGGAACUCCCUCGACg -3' miRNA: 3'- -CCGCGGUCUCGACCUUGAGGGAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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