miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21353 3' -53.3 NC_004778.3 + 9878 0.66 0.947595
Target:  5'- uCCUuacGCGCCGccaAAGUGCcgcccgGGCGCg -3'
miRNA:   3'- uGGGu--UGCGGCuugUUUACGa-----CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 12904 0.66 0.947595
Target:  5'- cCCCAAgcuCGCCcGACAGcgGaaucGGCGCg -3'
miRNA:   3'- uGGGUU---GCGGcUUGUUuaCga--CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 21288 0.66 0.947595
Target:  5'- uCCCGACGCCGcAgAGcgGCacgucGGCGa -3'
miRNA:   3'- uGGGUUGCGGCuUgUUuaCGa----CCGCg -5'
21353 3' -53.3 NC_004778.3 + 53680 0.66 0.944423
Target:  5'- uGCCCAaugcggcgcaaaacaACGCCGAACuAGAUcGCUuucauucggaaauGcGCGCg -3'
miRNA:   3'- -UGGGU---------------UGCGGCUUG-UUUA-CGA-------------C-CGCG- -5'
21353 3' -53.3 NC_004778.3 + 28758 0.66 0.943026
Target:  5'- cGCaaaCAGCGCCGAGa----GCUucGGCGCc -3'
miRNA:   3'- -UGg--GUUGCGGCUUguuuaCGA--CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 47716 0.66 0.943026
Target:  5'- cGCCU---GCUGAaaACGAugccGCUGGCGCa -3'
miRNA:   3'- -UGGGuugCGGCU--UGUUua--CGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 29540 0.66 0.941128
Target:  5'- -aCCAACGCCGugguggugucgcccGGCAAAccgcguUGCguguacagccgcuUGGCGCa -3'
miRNA:   3'- ugGGUUGCGGC--------------UUGUUU------ACG-------------ACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 115146 0.66 0.938205
Target:  5'- -gCCAGCGCgGGuCAuaauGUGgUGGUGCu -3'
miRNA:   3'- ugGGUUGCGgCUuGUu---UACgACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 59189 0.66 0.938205
Target:  5'- -gCCAACGCCGAGCGGuuagccGCcGaCGCa -3'
miRNA:   3'- ugGGUUGCGGCUUGUUua----CGaCcGCG- -5'
21353 3' -53.3 NC_004778.3 + 47522 0.66 0.938205
Target:  5'- cGCCCAaaauaACGCCGcACGcuGUGCagcGGCGg -3'
miRNA:   3'- -UGGGU-----UGCGGCuUGUu-UACGa--CCGCg -5'
21353 3' -53.3 NC_004778.3 + 61292 0.66 0.938205
Target:  5'- -aCCG--GCCG-ACAucugguuUGCUGGCGCa -3'
miRNA:   3'- ugGGUugCGGCuUGUuu-----ACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 49594 0.66 0.938205
Target:  5'- gGCaCCGACagguaGCCGuGCGAGcgcacUGCgGGCGCu -3'
miRNA:   3'- -UG-GGUUG-----CGGCuUGUUU-----ACGaCCGCG- -5'
21353 3' -53.3 NC_004778.3 + 31258 0.67 0.933131
Target:  5'- cACCUcGCGCCGAGaaacuUGCguucGCGCg -3'
miRNA:   3'- -UGGGuUGCGGCUUguuu-ACGac--CGCG- -5'
21353 3' -53.3 NC_004778.3 + 27343 0.67 0.93261
Target:  5'- uGCUgAAcCGCCGGggACAGGUuguuguaGUUGGCGCu -3'
miRNA:   3'- -UGGgUU-GCGGCU--UGUUUA-------CGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 45415 0.67 0.932086
Target:  5'- -gCUGAUGCUGuuaguuuUGCUGGCGCg -3'
miRNA:   3'- ugGGUUGCGGCuuguuu-ACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 107924 0.67 0.927802
Target:  5'- aACgCGACGCCGcccGACGAGcGCgacgcGGUGCu -3'
miRNA:   3'- -UGgGUUGCGGC---UUGUUUaCGa----CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 128793 0.67 0.927802
Target:  5'- aACCgGAuUGUCGAGCAAcgGC-GGCGg -3'
miRNA:   3'- -UGGgUU-GCGGCUUGUUuaCGaCCGCg -5'
21353 3' -53.3 NC_004778.3 + 112484 0.67 0.927802
Target:  5'- cGCgCCAGCgGCCGAugAAcucgagccgGUGCaUGuGCGCc -3'
miRNA:   3'- -UG-GGUUG-CGGCUugUU---------UACG-AC-CGCG- -5'
21353 3' -53.3 NC_004778.3 + 56979 0.67 0.927802
Target:  5'- aACaCGGCGCUGGACcuGUGC-GGCGg -3'
miRNA:   3'- -UGgGUUGCGGCUUGuuUACGaCCGCg -5'
21353 3' -53.3 NC_004778.3 + 100839 0.67 0.922218
Target:  5'- gUCCAGcCGCCGAugGAcgGCagaauuuugaGGUGCg -3'
miRNA:   3'- uGGGUU-GCGGCUugUUuaCGa---------CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.