miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21353 5' -49 NC_004778.3 + 2138 0.65 0.996688
Target:  5'- uUGCGCCGCAGcgugcacgagcugugCACGCGGu-- -3'
miRNA:   3'- uGCGCGGCGUCaaaaa----------GUGCGUUuaa -5'
21353 5' -49 NC_004778.3 + 43986 0.66 0.996393
Target:  5'- gGCGCGCCGCccaa---CGCGCGGc-- -3'
miRNA:   3'- -UGCGCGGCGucaaaaaGUGCGUUuaa -5'
21353 5' -49 NC_004778.3 + 31419 0.66 0.996393
Target:  5'- cGCGCGCgaaCGCaAGUUUcUCGgCGCGAGg- -3'
miRNA:   3'- -UGCGCG---GCG-UCAAAaAGU-GCGUUUaa -5'
21353 5' -49 NC_004778.3 + 40404 0.66 0.996206
Target:  5'- -aGCGCCGCuGUUUgcugaacguuuuggaCACGCAGu-- -3'
miRNA:   3'- ugCGCGGCGuCAAAaa-------------GUGCGUUuaa -5'
21353 5' -49 NC_004778.3 + 12979 0.66 0.995739
Target:  5'- gACGCGCCaaguCuGUUcugUUUCACGCGGGc- -3'
miRNA:   3'- -UGCGCGGc---GuCAA---AAAGUGCGUUUaa -5'
21353 5' -49 NC_004778.3 + 65494 0.66 0.994911
Target:  5'- aACGCGCCGUcgccaaacucgacAGUUUUUa--GCAGGUc -3'
miRNA:   3'- -UGCGCGGCG-------------UCAAAAAgugCGUUUAa -5'
21353 5' -49 NC_004778.3 + 5125 0.66 0.994408
Target:  5'- aACGCGCCGUGGcaaugucgcggcgCACGCAu--- -3'
miRNA:   3'- -UGCGCGGCGUCaaaaa--------GUGCGUuuaa -5'
21353 5' -49 NC_004778.3 + 46715 0.66 0.994141
Target:  5'- -gGCGCCGCAGUUguaauUGUAAAc- -3'
miRNA:   3'- ugCGCGGCGUCAAaaaguGCGUUUaa -5'
21353 5' -49 NC_004778.3 + 119002 0.66 0.994141
Target:  5'- cGCGCGCCGU-GUcugUUC-CGCGAGc- -3'
miRNA:   3'- -UGCGCGGCGuCAaa-AAGuGCGUUUaa -5'
21353 5' -49 NC_004778.3 + 121754 0.66 0.994141
Target:  5'- cGCGCGCUGCAGcagaaccCGCGCc---- -3'
miRNA:   3'- -UGCGCGGCGUCaaaaa--GUGCGuuuaa -5'
21353 5' -49 NC_004778.3 + 16424 0.66 0.993178
Target:  5'- cCGCGUCGUAGUgcccgUCGCaCGAGUa -3'
miRNA:   3'- uGCGCGGCGUCAaaa--AGUGcGUUUAa -5'
21353 5' -49 NC_004778.3 + 104630 0.67 0.992092
Target:  5'- uACGCGUCGaGGUguugCACGCAGc-- -3'
miRNA:   3'- -UGCGCGGCgUCAaaaaGUGCGUUuaa -5'
21353 5' -49 NC_004778.3 + 94851 0.67 0.992092
Target:  5'- aGCGCGCacgcuCGCGGUUca--GCGCGAAg- -3'
miRNA:   3'- -UGCGCG-----GCGUCAAaaagUGCGUUUaa -5'
21353 5' -49 NC_004778.3 + 89590 0.67 0.990873
Target:  5'- uCGCGCCGCAcg----CGCGCAu--- -3'
miRNA:   3'- uGCGCGGCGUcaaaaaGUGCGUuuaa -5'
21353 5' -49 NC_004778.3 + 107829 0.67 0.990873
Target:  5'- cACGCGCaa-GGUUUcgUCGCGCGAc-- -3'
miRNA:   3'- -UGCGCGgcgUCAAAa-AGUGCGUUuaa -5'
21353 5' -49 NC_004778.3 + 118782 0.67 0.990873
Target:  5'- gGCGCGgCGCGGccgg-CGCGCAcAAUUa -3'
miRNA:   3'- -UGCGCgGCGUCaaaaaGUGCGU-UUAA- -5'
21353 5' -49 NC_004778.3 + 106461 0.67 0.990873
Target:  5'- aGCGCGCUGCg------CGCGCAAAa- -3'
miRNA:   3'- -UGCGCGGCGucaaaaaGUGCGUUUaa -5'
21353 5' -49 NC_004778.3 + 47421 0.67 0.990873
Target:  5'- cACGCGCCaccccaacaucaGcCAGUUgagUACGCAAGUg -3'
miRNA:   3'- -UGCGCGG------------C-GUCAAaaaGUGCGUUUAa -5'
21353 5' -49 NC_004778.3 + 4204 0.67 0.990873
Target:  5'- uCGCGUCGUacauGGUUg--CGCGCAAGa- -3'
miRNA:   3'- uGCGCGGCG----UCAAaaaGUGCGUUUaa -5'
21353 5' -49 NC_004778.3 + 113910 0.67 0.989511
Target:  5'- -gGCGCCGCGGg--UUCcucgcuCGCGGAg- -3'
miRNA:   3'- ugCGCGGCGUCaaaAAGu-----GCGUUUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.